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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cotton-Guazuncho2xVH8-RIL
(Reference Set) 		Cotton-GVc
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Maps c2 11
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - Guazuncho2xVH8-RIL [ View Map Set Info ]
Map Name: c2
Map Start: 0 cM
Map Stop: 81.21 cM
Features by Type:
37 Marker
3 QTL
40 Total

Map Features

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Items 26 to 40 of 40.       Previous | of 2
Cotton - Guazuncho2xVH8-RIL - c2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
MUSB0399a Marker 39.09 Cotton - Guazuncho2xVH8-RIL - c13 MUSB0399b Marker 31.51 (cM) Automated name-based View Maps
Cotton - GVc - 13 MUSB0399 Marker 83.3 (cM) Automated name-based View Maps
Cotton - GVc - 2 MUSB0399 Marker 47.4 (cM) Automated name-based View Maps
Cotton - T3 - 6 MUSB0399 Marker 33.08 (cM) Automated name-based View Maps
MUSB0749 Marker 39.13 Cotton - T3 - 2 MUSB0749 Marker 49.82 (cM) Automated name-based View Maps
Cotton - GVc - 2 MUSB0749 Marker 46.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 MUSB0749 Marker Cotton 52,041,922 - 52,043,121 (bp) Automated name-based View Maps
E31M48-M270.5 Marker 40.5 No other positions
CIR381a Marker 0 Cotton - CH - 4 CIR381 Marker 24.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c14 CIR381b Marker 25.16 (cM) Automated name-based View Maps
Cotton - GVc - 2 CIR381 Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 CIR381 Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c14 CIR381 Marker 16.3 (cM) Automated name-based View Maps
Cotton - E3 - 2 CIR381 Marker 29.7 (cM) Automated name-based View Maps
Cotton - GVc - 14 CIR381 Marker 23 (cM) Automated name-based View Maps
BNL1434b Marker 10.76 Cotton - Guazuncho2xVH8-BC2 - c2 BNL1434 Marker 0 (cM) Automated name-based View Maps
Cotton - E3 - 2 BNL1434 Marker 37.6 (cM) Automated name-based View Maps
Cotton - CH - 2 BNL1434 Marker 88.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c9 BNL1434 Marker 16.7 (cM) Automated name-based View Maps
Cotton - GVc - 2 BNL1434 Marker 15.3 (cM) Automated name-based View Maps
Cotton - T3 - 2 BNL1434 Marker 95.17 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 BNL1434 Marker 15.5 (cM) Automated name-based View Maps
Unig25A02 Marker 14.08 Cotton - PK - c14 Unig25A02 Marker 18.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 Unig25A02 Marker 33.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 Unig25A02 Marker Cotton 5,146,138 - 5,146,511 (bp) Automated name-based View Maps
Cotton - GVc - 2 Unig25A02 Marker 20.1 (cM) Automated name-based View Maps
Cotton - PK - c14 Unig25A02 Marker 47.9 (cM) Automated name-based View Maps
Cotton - PK - c2 Unig25A02 Marker 55.1 (cM) Automated name-based View Maps
E31M48-M87.2 Marker 15.4 No other positions
BNL1897a Marker 18.3 Cotton - Guazuncho2xVH8-BC2 - c2 BNL1897 Marker 15.1 (cM) Automated name-based View Maps
Cotton - GVc - 2 BNL1897 Marker 23.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 BNL1897 Marker 35.8 (cM) Automated name-based View Maps
Cotton - GVc - 14 BNL1897 Marker 32.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c14 BNL1897b Marker 36 (cM) Automated name-based View Maps
Cotton - TH - 2 BNL1897 Marker 41.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c14 BNL1897 Marker 28.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 BNL1897 Marker Cotton 5,570,077 - 5,570,292 (bp) Automated name-based View Maps
Cotton - T3 - 2 BNL1897 Marker 86.46 (cM) Automated name-based View Maps
Cotton - CH - 2 BNL1897 Marker 69.1 (cM) Automated name-based View Maps
Cotton - E3 - 2 BNL1897 Marker 59.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c14 BNL1897 Marker 18.4 (cM) Automated name-based View Maps
E32M54-M107.8 Marker 21.91 No other positions
JESPR179a Marker 24.57 Cotton - Guazuncho2xVH8-BC1 - c2 JESPR179 Marker 51.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 JESPR179 Marker Cotton 7,198,531 - 7,199,048 (bp) Automated name-based View Maps
Cotton - TH - 2 JESPR179 Marker 61.4 (cM) Automated name-based View Maps
Cotton - GVc - 2 JESPR179 Marker 35.6 (cM) Automated name-based View Maps
Cotton - GVc - 14 JESPR179 Marker 38.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c14 JESPR179 Marker 37.8 (cM) Automated name-based View Maps
Cotton - T3 - 2 JESPR179 Marker 76.19 (cM) Automated name-based View Maps
MUSB1017 Marker 26.6 Cotton - GVc - 2 MUSB1017 Marker 33.8 (cM) Automated name-based View Maps
Cotton - T3 - 2 MUSB1017 Marker 78.88 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 MUSB1017 Marker Cotton 7,766,417 - 7,767,237 (bp) Automated name-based View Maps
CIR401 Marker 32.04 Cotton - Guazuncho2xVH8-BC1 - c2 CIR401 Marker 65.9 (cM) Automated name-based View Maps
Cotton - CH - 5 CIR401 Marker 125.4 (cM) Automated name-based View Maps
Cotton - E3 - 5 CIR401 Marker 148.5 (cM) Automated name-based View Maps
Cotton - CH - 2 CIR401 Marker 54.4 (cM) Automated name-based View Maps
Cotton - E3 - 2 CIR401 Marker 73.1 (cM) Automated name-based View Maps
Cotton - GVc - 2 CIR401 Marker 39.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 CIR401 Marker Cotton 18,230,597 - 18,230,764 (bp) Automated name-based View Maps
eQTL_10_dpa_c2A QTL 35 - 39 No other positions
eQTL_22_dpa_c2 QTL 39 - 43 No other positions
eQTL_10_dpa_c2B QTL 67 - 77 No other positions