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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cocoa-ref_UPA402xUF676
(Reference Set) 		Cocoa-test
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Maps LG1 LG1
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Correspondence		 Always Display
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Show Labels: None Landmarks All
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Features:		 No Yes
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - ref_UPA402xUF676 [ View Map Set Info ]
Map Name: LG1
Map Start: 0 cM
Map Stop: 97.8 cM
Features by Type:
59 Marker
5 QTL
64 Total

Map Features

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Items 51 to 64 of 64.       Previous | of 3
Cocoa - ref_UPA402xUF676 - LG1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR97 Marker 65.9 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR97 Marker 63.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR97 Marker 65.9 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR97 Marker 65.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR97 Marker 24,882,340 - 24,883,333 (bp) Automated name-based View Maps
mTcCIR102 Marker 37.7 Cocoa - test - LG1 mTcCIR102 Marker 37.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR102 Marker 37.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR102 Marker 8,939,604 - 8,939,836 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR102 Marker 35.5 (cM) Automated name-based View Maps
mTcCIR106 Marker 11.7 Cocoa - consensus_disease_res - LG1 mTcCIR106 Marker 11.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR106 Marker 9.7 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR106 Marker 11.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR106 Marker 2,476,580 - 2,477,166 (bp) Automated name-based View Maps
C66 Marker 27.5 Cocoa - Physical map - Tc01 C66 Marker 5,132,737 - 5,132,867 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 C66 Marker 25.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 C66 Marker 27.5 (cM) Automated name-based View Maps
Cocoa - test - LG1 C66 Marker 27.5 (cM) Automated name-based View Maps
C55 Marker 51.2 Cocoa - consensus_disease_res - LG1 C55 Marker 51.2 (cM) Automated name-based View Maps
Cocoa - test - LG1 C55 Marker 51.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 C55 Marker 48.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 C55 Marker 16,664,914 - 16,664,971 (bp) Automated name-based View Maps
mTcCIR88 Marker 34.5 Cocoa - test - LG1 mTcCIR88 Marker 34.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR88 Marker 34.5 (cM) Automated name-based View Maps
mTcCIR84 Marker 54.5 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR84 Marker 50.8 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR84 Marker 54.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR84 Marker 19,297,274 - 19,297,422 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR84 Marker 54.5 (cM) Automated name-based View Maps
mTcCIR66 Marker 24.2 Cocoa - consensus_disease_res - LG1 mTcCIR66 Marker 24.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR66 Marker 24.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR66 Marker 1,489,870 - 1,490,280 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR66 Marker 24.2 (cM) Automated name-based View Maps
ADH Marker 30.8 Cocoa - consensus_disease_res - LG1 ADH Marker 30.8 (cM) Automated name-based View Maps
Cocoa - test - LG1 ADH Marker 30.8 (cM) Automated name-based View Maps
ref_FAT/NIRS_lg1 QTL 58.5 No other positions
ref_Cocoa_lg1 QTL 58.4 No other positions
ref_FLO5_lg1 QTL 44.6 No other positions
ref_WIN5_lg1 QTL 58.4 No other positions
ref_FRU_lg1 QTL 64.4 No other positions