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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-TH
(Reference Set)
Min.
Correspondences
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Stack
Maps 3
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - TH [ View Map Set Info ]
Map Name: 3
Map Start: 0 cM
Map Stop: 103.9 cM
Features by Type:
59 Marker
59 Total

Map Features

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Items 1 to 25 of 59.       of 3 | Next
Cotton - TH - 3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
NAU1248 Marker 18.1 Cotton - Graimondii_physical - Gr_Chr05 NAU1248 Marker Cotton 54,818,067 - 54,818,589 (bp) Automated name-based View Maps
Cotton - T3 - 3 NAU1248 Marker 45.76 (cM) Automated name-based View Maps
Cotton - HDC - 3 NAU1248 Marker 54.8 (cM) Automated name-based View Maps
Cotton - CH - 3 NAU1248 Marker 25 (cM) Automated name-based View Maps
Cotton - CH - 3 NAU1248 Marker 23.9 (cM) Automated name-based View Maps
NAU1068 Marker 18.4 Cotton - HDC - 3 NAU1068 Marker 52.4 (cM) Automated name-based View Maps
Cotton - T3 - 3 NAU1068 Marker 43.27 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 NAU1068 Marker Cotton 56,289,822 - 56,290,462 (bp) Automated name-based View Maps
NAU6474 Marker 18.6 Cotton - TH - 14 NAU6474 Marker 57.4 (cM) Automated name-based View Maps
Cotton - HDC - 14 NAU6474 Marker 55.8 (cM) Automated name-based View Maps
NAU5035 Marker 18.8 Cotton - HDC - 3 NAU5035 Marker 42.5 (cM) Automated name-based View Maps
Cotton - E3 - 3 NAU5035 Marker 115.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 NAU5035 Marker Cotton 53,450,101 - 53,451,003 (bp) Automated name-based View Maps
NAU6371 Marker 19.7 No other positions
Y2721-580 Marker 19.9 No other positions
NAU1190 Marker 20.1 Cotton - HDC - 3 CLU1372 Marker 68 (cM) Automated name-based View Maps
Cotton - HDC - 3 CLU1372 Marker 67.1 (cM) Automated name-based View Maps
Cotton - T3 - 3 NAU1190 Marker 58.2 (cM) Automated name-based View Maps
NAU1179 Marker 21 No other positions
TML04-200 Marker 21.3 No other positions
NAU3021 Marker 21.7 Cotton - HDC - 3 CLU644 Marker 75.3 (cM) Automated name-based View Maps
NAU3439 Marker 22 Cotton - HDC - 14 NAU3439 Marker 76.1 (cM) Automated name-based View Maps
Cotton - TH - 14 NAU3439 Marker 68.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 NAU3439 Marker Cotton 25,203,081 - 25,203,722 (bp) Automated name-based View Maps
Cotton - HDC - 9 NAU3439 Marker 55.2 (cM) Automated name-based View Maps
Cotton - E3 - 9 NAU3439 Marker 60.5 (cM) Automated name-based View Maps
NAU3394 Marker 22.1 Cotton - E3 - 3 NAU3394 Marker 83.5 (cM) Automated name-based View Maps
Cotton - HDC - 3 CLU2758 Marker 78.2 (cM) Automated name-based View Maps
Cotton - HDC - 14 CLU2758 Marker 82.9 (cM) Automated name-based View Maps
Cotton - HDC - 3 CLU2758 Marker 93.6 (cM) Automated name-based View Maps
NAU3808 Marker 22.1 No other positions
NAU2440 Marker 22.1 No other positions
NAU0884 Marker 22.3 Cotton - T3 - 3 NAU0884 Marker 63.03 (cM) Automated name-based View Maps
Cotton - GVc - 3 NAU0884 Marker 38.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c3 NAU0884 Marker 26.26 (cM) Automated name-based View Maps
Cotton - HDC - 3 NAU0884 Marker 77.4 (cM) Automated name-based View Maps
JESPR149 Marker 23.1 No other positions
BNL3441 Marker 23.3 Cotton - Graimondii_physical - Gr_Chr03 BNL3441 Marker Cotton 31,875,965 - 31,876,681 (bp) Automated name-based View Maps
Cotton - GVc - 3 BNL3441 Marker 35.7 (cM) Automated name-based View Maps
Cotton - CH - 3 BNL3441 Marker 19 (cM) Automated name-based View Maps
Cotton - T3 - 3 BNL3441 Marker 68.58 (cM) Automated name-based View Maps
Cotton - HDC - 3 BNL3441 Marker 79.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c3 BNL3441 Marker 39.7 (cM) Automated name-based View Maps
Cotton - E3 - 3 BNL3441 Marker 83.4 (cM) Automated name-based View Maps
NAU3541 Marker 23.9 Cotton - HDC - 3 CLU4402 Marker 51.9 (cM) Automated name-based View Maps
Cotton - E3 - 3 NAU3541 Marker 106.3 (cM) Automated name-based View Maps
NAU0796 Marker 24.3 No other positions
NAU0889 Marker 25.9 Cotton - HDC - 17 NAU0889 Marker 77.8 (cM) Automated name-based View Maps
Cotton - TH - 17 NAU0889 Marker 55.6 (cM) Automated name-based View Maps
BNL3501 Marker 26.9 No other positions
NAU1070 Marker 27.8 Cotton - Graimondii_physical - Gr_Chr05 NAU1070 Marker Cotton 58,987,292 - 58,987,936 (bp) Automated name-based View Maps
Cotton - HDC - 3 NAU1070 Marker 45.4 (cM) Automated name-based View Maps
Cotton - T3 - 3 NAU1070 Marker 35.47 (cM) Automated name-based View Maps
Cotton - T3 - 14 NAU1070 Marker 44.59 (cM) Automated name-based View Maps
Cotton - TH - 14 NAU1070 Marker 15 (cM) Automated name-based View Maps
Cotton - HDC - 14 NAU1070 Marker 24.2 (cM) Automated name-based View Maps
Cotton - HDC - 14 NAU1070 Marker 42.6 (cM) Automated name-based View Maps
MUCS308 Marker 29.4 Cotton - Graimondii_physical - Gr_Chr03 MUCS308 Marker Cotton 35,193,795 - 35,194,347 (bp) Automated name-based View Maps
Cotton - TH - 7 MUCS308 Marker 72.2 (cM) Automated name-based View Maps
Cotton - HDC - 7 MUCS308 Marker 62.1 (cM) Automated name-based View Maps
EM2SA17-120 Marker 30.5 No other positions
BNL2443 Marker 31.7 Cotton - Guazuncho2xVH8-RIL - c3 BNL2443b Marker 16.49 (cM) Automated name-based View Maps
Cotton - HDC - 3 BNL2443 Marker 87.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c17 BNL2443a Marker 20.66 (cM) Automated name-based View Maps
Cotton - HDC - 17 BNL2443 Marker 82.9 (cM) Automated name-based View Maps
Cotton - GVc - 17 BNL2443 Marker 18 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c17 BNL2443 Marker 23 (cM) Automated name-based View Maps
Cotton - HDC - 3 BNL2443 Marker 86.3 (cM) Automated name-based View Maps
Cotton - HDC - 17 BNL2443 Marker 22 (cM) Automated name-based View Maps
Cotton - GVc - 3 BNL2443 Marker 24.8 (cM) Automated name-based View Maps
Cotton - GVc - 3 BNL2443 Marker 26.4 (cM) Automated name-based View Maps
Cotton - TH - 17 BNL2443 Marker 50.9 (cM) Automated name-based View Maps
Cotton - T3 - 17 BNL2443 Marker 92.59 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 BNL2443 Marker Cotton 36,198,720 - 36,199,283 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c3 BNL2443 Marker 25.4 (cM) Automated name-based View Maps
Cotton - E3 - 17 BNL2443 Marker 73.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c3 BNL2443c Marker 14.55 (cM) Automated name-based View Maps
Cotton - CH - 14 BNL2443 Marker 61.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c17 BNL2443 Marker 35.9 (cM) Automated name-based View Maps
Cotton - HDC - 14 BNL2443 Marker 90 (cM) Automated name-based View Maps