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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-E3
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 6
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - E3 [ View Map Set Info ]
Map Name: 6
Map Start: 0 cM
Map Stop: 172.1 cM
Features by Type:
78 Marker
78 Total

Map Features

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Items 1 to 25 of 78.       of 4 | Next
Cotton - E3 - 6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
NAU5433 Marker 98.8 Cotton - HDC - 6 CLU4928 Marker 85.6 (cM) Automated name-based View Maps
Cotton - TH - 6 NAU5433 Marker 57.4 (cM) Automated name-based View Maps
HAU0483 Marker 98.7 Cotton - HDC - 6 CLU585 Marker 85.9 (cM) Automated name-based View Maps
TMB2958 Marker 96.8 Cotton - Graimondii_physical - Gr_Chr08 TMB2958 Marker Cotton 37,659,863 - 37,660,485 (bp) Automated name-based View Maps
Cotton - T3 - 6 TMB2958 Marker 55.1 (cM) Automated name-based View Maps
Cotton - HDC - 6 TMB2958 Marker 86.9 (cM) Automated name-based View Maps
HAU1293 Marker 96 Cotton - HDC - 6 HAU1293 Marker 87.1 (cM) Automated name-based View Maps
HAU0091 Marker 94.9 Cotton - HDC - 6 HAU0091 Marker 87.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 HAU0091 Marker Cotton 35,310,002 - 35,310,530 (bp) Automated name-based View Maps
NAU2679 Marker 94.8 Cotton - E3 - 25 NAU2679 Marker 86.6 (cM) Automated name-based View Maps
Cotton - HDC - 25 CLU1335 Marker 74.3 (cM) Automated name-based View Maps
Cotton - HDC - 6 CLU1335 Marker 87.4 (cM) Automated name-based View Maps
MUSB1064 Marker 94.8 Cotton - T3 - 1 MUSB1064 Marker 37.03 (cM) Automated name-based View Maps
Cotton - T3 - 10 MUSB1064 Marker 62.18 (cM) Automated name-based View Maps
Cotton - HDC - 1 MUSB1064 Marker 93 (cM) Automated name-based View Maps
Cotton - HDC - 6 MUSB1064 Marker 87.4 (cM) Automated name-based View Maps
Cotton - HDC - 10 MUSB1064 Marker 81.7 (cM) Automated name-based View Maps
HAU1537 Marker 94.8 Cotton - Graimondii_physical - Gr_Chr10 HAU1537 Marker Cotton 29,899,054 - 29,899,889 (bp) Automated name-based View Maps
Cotton - HDC - 6 HAU1537 Marker 87.4 (cM) Automated name-based View Maps
HAU1488 Marker 94.8 Cotton - HDC - 6 CLU671 Marker 87.4 (cM) Automated name-based View Maps
TMB2959 Marker 94.7 Cotton - HDC - 6 TMB2959 Marker 87.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 TMB2959 Marker Cotton 24,970,073 - 24,970,707 (bp) Automated name-based View Maps
MUSB1164 Marker 94.7 Cotton - T3 - 6 MUSB1164 Marker 58.62 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 MUSB1164 Marker Cotton 34,194,497 - 34,195,142 (bp) Automated name-based View Maps
Cotton - HDC - 6 MUSB1164 Marker 90.3 (cM) Automated name-based View Maps
HAU0668 Marker 94 Cotton - HDC - 6 CLU671 Marker 87.4 (cM) Automated name-based View Maps
BNL1064 Marker 93.4 Cotton - CH - 6 BNL1064 Marker 90.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c6 BNL1064 Marker 25.34 (cM) Automated name-based View Maps
Cotton - T3 - 6 BNL1064 Marker 56.46 (cM) Automated name-based View Maps
Cotton - TH - 6 BNL1064 Marker 64.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c6 BNL1064 Marker 148 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 BNL1064 Marker Cotton 26,566,573 - 26,566,814 (bp) Automated name-based View Maps
Cotton - PK - c6 BNL1064 Marker 58 (cM) Automated name-based View Maps
Cotton - HDC - 6 BNL1064 Marker 88.1 (cM) Automated name-based View Maps
Cotton - GVc - 6 BNL1064 Marker 63 (cM) Automated name-based View Maps
HAU2768 Marker 91.5 Cotton - HDC - 6 HAU2768 Marker 90.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 HAU2768 Marker Cotton 46,228,955 - 46,229,491 (bp) Automated name-based View Maps
BNL3812 Marker 90.5 Cotton - HDC - 6 BNL3812 Marker 92.4 (cM) Automated name-based View Maps
Cotton - T3 - 6 BNL3812 Marker 60.5 (cM) Automated name-based View Maps
Cotton - CH - 6 BNL3812 Marker 96.5 (cM) Automated name-based View Maps
BNL0861 Marker 89.7 Cotton - HDC - 6 BNL0861 Marker 92.6 (cM) Automated name-based View Maps
JESPR247 Marker 89 Cotton - T3 - 9 JESPR247 Marker 114.47 (cM) Automated name-based View Maps
Cotton - HDC - 9 JESPR247 Marker 42 (cM) Automated name-based View Maps
Cotton - T3 - 23 JESPR247 Marker 104.78 (cM) Automated name-based View Maps
Cotton - HDC - 6 JESPR247 Marker 92.8 (cM) Automated name-based View Maps
Cotton - HDC - 23 JESPR247 Marker 70 (cM) Automated name-based View Maps
BNL3295 Marker 87.3 Cotton - HDC - 6 BNL3295 Marker 87.6 (cM) Automated name-based View Maps
Cotton - TH - 6 BNL3295 Marker 62.1 (cM) Automated name-based View Maps
Cotton - T3 - 6 BNL3295 Marker 55.88 (cM) Automated name-based View Maps
CIR233 Marker 85.4 Cotton - HDC - 26 CIR233 Marker 50.4 (cM) Automated name-based View Maps
Cotton - HDC - 6 CIR233 Marker 93.7 (cM) Automated name-based View Maps
Cotton - CH - 26 CIR233 Marker 173.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 CIR233 Marker Cotton 7,670,699 - 7,670,980 (bp) Automated name-based View Maps
Cotton - GVc - 26 CIR233 Marker 93.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c26 CIR233 Marker 140.4 (cM) Automated name-based View Maps
HAU2467 Marker 84.2 Cotton - E3 - 25 HAU2467 Marker 85.6 (cM) Automated name-based View Maps
Cotton - HDC - 25 CLU1560 Marker 76 (cM) Automated name-based View Maps
Cotton - HDC - 6 CLU1560 Marker 94 (cM) Automated name-based View Maps
CS097 Marker 78 Cotton - HDC - 6 CS097 Marker 95.6 (cM) Automated name-based View Maps
DPL0153 Marker 76.3 Cotton - HDC - 6 DPL0153 Marker 103 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 DPL0153 Marker Cotton 17,067,950 - 17,068,620 (bp) Automated name-based View Maps
Cotton - T3 - 6 DPL0153 Marker 70.67 (cM) Automated name-based View Maps
DPL0681 Marker 73.3 Cotton - Graimondii_physical - Gr_Chr10 DPL0681 Marker Cotton 19,767,051 - 19,767,811 (bp) Automated name-based View Maps
Cotton - T3 - 6 DPL0681 Marker 64.51 (cM) Automated name-based View Maps
Cotton - HDC - 6 DPL0681 Marker 96.7 (cM) Automated name-based View Maps
HAU0376 Marker 72.1 Cotton - HDC - 6 CLU545 Marker 97.9 (cM) Automated name-based View Maps
Gh082 Marker 70.2 Cotton - HDC - 6 Gh082 Marker 99.7 (cM) Automated name-based View Maps
Cotton - T3 - 6 Gh082 Marker 67.24 (cM) Automated name-based View Maps