CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps c22
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c22
Map Start: 0 cM
Map Stop: 95.4 cM
Features by Type:
64 Marker
11 QTL
75 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 75.       of 3 | Next
Cotton - PK - c22
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
A1459 Marker 46.7 Cotton - HDC - 22 A1459 Marker 46.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 A1459 Marker Cotton 12,937,188 - 12,937,898 (bp) Automated name-based View Maps
Cotton - HDC - 5 A1459 Marker 48.2 (cM) Automated name-based View Maps
Cotton - PK - c5 A1459 Marker 155.7 (cM) Automated name-based View Maps
A1535 Marker 46.7 Cotton - PK - c5 A1535 Marker 155.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 A1535 Marker 91.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 A1535 Marker Cotton 12,827,598 - 12,828,720 (bp) Automated name-based View Maps
Cotton - HDC - 22 A1535 Marker 46.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c5 A1535 Marker 255.8 (cM) Automated name-based View Maps
Cotton - GVc - 5 A1535 Marker 93 (cM) Automated name-based View Maps
Cotton - GVc - 22 A1535 Marker 60.1 (cM) Automated name-based View Maps
Cotton - HDC - 5 A1535 Marker 48.2 (cM) Automated name-based View Maps
A1619 Marker 44.9 Cotton - PK - c16 A1619 Marker 4.8 (cM) Automated name-based View Maps
Cotton - HDC - 16 A1619 Marker 7.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 A1619 Marker Cotton 54,527,798 - 54,529,052 (bp) Automated name-based View Maps
Cotton - HDC - 22 A1619 Marker 48.3 (cM) Automated name-based View Maps
BNL1061 Marker 33.2 Cotton - T3 - 25 BNL1061 Marker 104.28 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c22 BNL1061 Marker 33.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c25 BNL1061 Marker 39 (cM) Automated name-based View Maps
Cotton - PK - c25 BNL1061 Marker 55.3 (cM) Automated name-based View Maps
Cotton - HDC - 25 CLU6 Marker 116 (cM) Automated name-based View Maps
Cotton - GVc - 25 BNL1061 Marker 33.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c25 BNL1061 Marker 25.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c25 BNL1061b Marker 11.64 (cM) Automated name-based View Maps
Cotton - E3 - 25 BNL1061 Marker 45.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 BNL1061 Marker 47.5 (cM) Automated name-based View Maps
Cotton - TH - 25 BNL1061 Marker 85.4 (cM) Automated name-based View Maps
Cotton - GVc - 22 BNL1061 Marker 40 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU6 Marker 61 (cM) Automated name-based View Maps
Cotton - HDC - 25 CLU6 Marker 121.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c22 BNL1061a Marker 38.36 (cM) Automated name-based View Maps
Cotton - CH - 25 BNL1061 Marker 39.3 (cM) Automated name-based View Maps
BNL3955 Marker 25 Cotton - HDC - 17 BNL3955 Marker 69.4 (cM) Automated name-based View Maps
Cotton - TH - 17 BNL3955 Marker 36.8 (cM) Automated name-based View Maps
Cotton - HDC - 6 BNL3955 Marker 87.5 (cM) Automated name-based View Maps
Cotton - PK - c17 BNL3955 Marker 53.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c6 BNL3955 Marker 143.6 (cM) Automated name-based View Maps
Cotton - CH - 17 BNL3955 Marker 122.3 (cM) Automated name-based View Maps
Cotton - E3 - 5 BNL3955 Marker 193.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 BNL3955 Marker Cotton 47,731,898 - 47,732,520 (bp) Automated name-based View Maps
Cotton - HDC - 22 BNL3955 Marker 67.8 (cM) Automated name-based View Maps
Cotton - T3 - 17 BNL3955 Marker 44.77 (cM) Automated name-based View Maps
Cotton - GVc - 6 BNL3955 Marker 64.4 (cM) Automated name-based View Maps
G1058 Marker 19.5 Cotton - HDC - 22 G1058 Marker 72.4 (cM) Automated name-based View Maps
Cotton - GVc - 22 G1058 Marker 27.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 G1058 Marker Cotton 31,824,103 - 31,824,549 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 G1058 Marker 24.4 (cM) Automated name-based View Maps
Gate1BA05 Marker 25 Cotton - HDC - 13 Gate1BA05 Marker 54.9 (cM) Automated name-based View Maps
Cotton - HDC - 4 Gate1BA05 Marker 65.9 (cM) Automated name-based View Maps
Cotton - PK - c4 Gate1BA05 Marker 78.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 Gate1BA05 Marker Cotton 42,062,748 - 42,063,412 (bp) Automated name-based View Maps
Cotton - PK - A01 Gate1BA05 Marker 105.5 (cM) Automated name-based View Maps
Cotton - HDC - 22 Gate1BA05 Marker 67.8 (cM) Automated name-based View Maps
Gate1CD11 Marker 0 Cotton - HDC - 12 Gate1CD11 Marker 46.8 (cM) Automated name-based View Maps
Cotton - PK - c12 Gate1CD11 Marker 132.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 Gate1CD11 Marker Cotton 38,678,754 - 38,679,378 (bp) Automated name-based View Maps
Cotton - HDC - 22 Gate1CD11 Marker 91 (cM) Automated name-based View Maps
Cotton - PK - c26 Gate1CD11 Marker 92.1 (cM) Automated name-based View Maps
Cotton - HDC - 26 Gate1CD11 Marker 71.9 (cM) Automated name-based View Maps
Gate1DG02 Marker 23.9 Cotton - HDC - 22 Gate1DG02 Marker 68.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 Gate1DG02 Marker Cotton 31,069,423 - 31,070,112 (bp) Automated name-based View Maps
Gate2BG01 Marker 52 Cotton - HDC - 22 Gate2BG01 Marker 41.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 Gate2BG01 Marker Cotton 59,148,849 - 59,149,539 (bp) Automated name-based View Maps
Gate3DE03 Marker 33.2 Cotton - HDC - 12 Gate3DE03 Marker 50.5 (cM) Automated name-based View Maps
Cotton - PK - c12 Gate3DE03 Marker 113.4 (cM) Automated name-based View Maps
Cotton - HDC - 22 Gate3DE03 Marker 61 (cM) Automated name-based View Maps
Cotton - HDC - 4 Gate3DE03 Marker 64.7 (cM) Automated name-based View Maps
Cotton - PK - c4 Gate3DE03 Marker 85 (cM) Automated name-based View Maps
Gate4AD10 Marker 39.9 Cotton - HDC - 4 Gate4AD10 Marker 59.5 (cM) Automated name-based View Maps
Cotton - PK - c4 Gate4AD10 Marker 108 (cM) Automated name-based View Maps
Cotton - HDC - 22 Gate4AD10 Marker 54.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 Gate4AD10 Marker Cotton 62,354,809 - 62,355,592 (bp) Automated name-based View Maps
Gate4BA04 Marker 52 Cotton - HDC - 22 Gate4BA04 Marker 41.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 Gate4BA04 Marker Cotton 20,371,858 - 20,372,424 (bp) Automated name-based View Maps
Gate4CA01 Marker 36.8 Cotton - PK - c1 Gate4CA01 Marker 12.3 (cM) Automated name-based View Maps
Cotton - HDC - 1 Gate4CA01 Marker 27.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 Gate4CA01 Marker Cotton 61,340,987 - 61,341,702 (bp) Automated name-based View Maps
Cotton - HDC - 22 Gate4CA01 Marker 57.3 (cM) Automated name-based View Maps
Gate4CG05 Marker 31.3 Cotton - HDC - 22 Gate4CG05 Marker 60.1 (cM) Automated name-based View Maps
Cotton - HDC - 22 Gate4CG05 Marker 62.6 (cM) Automated name-based View Maps
Cotton - HDC - 4 Gate4CG05 Marker 63.8 (cM) Automated name-based View Maps
Cotton - PK - c4 Gate4CG05 Marker 90.5 (cM) Automated name-based View Maps
Gate4CG07 Marker 90.8 Cotton - Graimondii_physical - Gr_Chr12 Gate4CG07 Marker Cotton 1,937,810 - 1,938,244 (bp) Automated name-based View Maps
Cotton - HDC - 22 Gate4CG07 Marker 4.4 (cM) Automated name-based View Maps
pAR023 Marker 58.6 Cotton - HDC - 5 pAR023 Marker 35.7 (cM) Automated name-based View Maps
Cotton - HDC - 22 pAR023 Marker 35.1 (cM) Automated name-based View Maps
Cotton - PK - c5 pAR023 Marker 182.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 pAR023 Marker Cotton 5,736,777 - 5,737,621 (bp) Automated name-based View Maps
PAR04H06 Marker 68.4 Cotton - HDC - 22 pAR04H06 Marker 25.7 (cM) Automated name-based View Maps
PAR07F11 Marker 8.7 Cotton - HDC - 22 pAR07F11 Marker 82.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 pAR07F11 Marker Cotton 34,941,034 - 34,941,736 (bp) Automated name-based View Maps
PAR08H07 Marker 44 Cotton - HDC - 22 pAR08H07 Marker 49.4 (cM) Automated name-based View Maps
pAR10G09 Marker 49.4 Cotton - Graimondii_physical - Gr_Chr12 pAR10G09 Marker Cotton 10,617,047 - 10,617,939 (bp) Automated name-based View Maps
Cotton - HDC - 22 pAR10G09 Marker 43.9 (cM) Automated name-based View Maps
pAR144 Marker 47.6 Cotton - HDC - 9 pAR144 Marker 23.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c9 pAR144 Marker 64.4 (cM) Automated name-based View Maps
Cotton - PK - c10 pAR144 Marker 137.3 (cM) Automated name-based View Maps
Cotton - PK - D02 pAR144 Marker 166.9 (cM) Automated name-based View Maps
Cotton - HDC - 9 pAR144 Marker 128.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 pAR144 Marker Cotton 36,335,971 - 36,336,504 (bp) Automated name-based View Maps
Cotton - HDC - 26 pAR144 Marker 60 (cM) Automated name-based View Maps
Cotton - HDC - 22 pAR144 Marker 45.6 (cM) Automated name-based View Maps
Cotton - HDC - 21 pAR144 Marker 69.7 (cM) Automated name-based View Maps
Cotton - HDC - 10 pAR144 Marker 49.3 (cM) Automated name-based View Maps
Cotton - PK - c26 pAR144 Marker 117.2 (cM) Automated name-based View Maps
Cotton - GVc - 9 pAR144 Marker 17.2 (cM) Automated name-based View Maps
Cotton - PK - c9 pAR144 Marker 33.9 (cM) Automated name-based View Maps
Cotton - PK - c9 pAR144 Marker 146.7 (cM) Automated name-based View Maps
PAR4_22 Marker 61 No other positions
pAR643 Marker 59 Cotton - Graimondii_physical - Gr_Chr05 pAR643 Marker Cotton 39,060,751 - 39,061,334 (bp) Automated name-based View Maps
Cotton - HDC - 22 pAR643 Marker 34.7 (cM) Automated name-based View Maps
pAR977 Marker 59.9 Cotton - HDC - 22 pAR977 Marker 33.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 pAR977 Marker Cotton 5,422,706 - 5,423,503 (bp) Automated name-based View Maps