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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-TH
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 25
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - TH [ View Map Set Info ]
Map Name: 25
Map Start: 0 cM
Map Stop: 129.1 cM
Features by Type:
82 Marker
82 Total

Map Features

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Items 1 to 25 of 82.       of 4 | Next
Cotton - TH - 25
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ME8GA25-160 Marker 42.9 Cotton - HDC - 25 ME8GA25-160 Marker 69.5 (cM) Automated name-based View Maps
NAU2904 Marker 43.8 Cotton - HDC - 5 CLU4169 Marker 110.7 (cM) Automated name-based View Maps
Cotton - HDC - 21 CLU4169 Marker 117.8 (cM) Automated name-based View Maps
Cotton - E3 - 21 NAU2904 Marker 118.2 (cM) Automated name-based View Maps
Cotton - HDC - 25 CLU4169 Marker 70.4 (cM) Automated name-based View Maps
NAU2717 Marker 44.3 Cotton - HDC - 25 CLU3928 Marker 70.8 (cM) Automated name-based View Maps
Cotton - E3 - 25 NAU2717 Marker 68.2 (cM) Automated name-based View Maps
BNL1517 Marker 45.5 Cotton - E3 - 25 BNL1517 Marker 79.2 (cM) Automated name-based View Maps
Cotton - CH - 25 BNL1517 Marker 66.4 (cM) Automated name-based View Maps
Cotton - HDC - 25 BNL1517 Marker 71.9 (cM) Automated name-based View Maps
BNL3264 Marker 45.6 Cotton - E3 - 25 BNL3264 Marker 88.3 (cM) Automated name-based View Maps
Cotton - HDC - 25 BNL3264 Marker 72 (cM) Automated name-based View Maps
Cotton - CH - 25 BNL3264 Marker 89.2 (cM) Automated name-based View Maps
MUCS337 Marker 46.3 Cotton - Graimondii_physical - Gr_Chr10 MUCS337 Marker Cotton 12,475,315 - 12,475,905 (bp) Automated name-based View Maps
Cotton - T3 - 5 MUCS337 Marker 17.88 (cM) Automated name-based View Maps
Cotton - HDC - 5 MUCS337 Marker 115.6 (cM) Automated name-based View Maps
Cotton - HDC - 25 MUCS337 Marker 72.6 (cM) Automated name-based View Maps
NAU2687 Marker 46.3 Cotton - Graimondii_physical - Gr_Chr10 NAU2687 Marker Cotton 44,856,470 - 44,857,388 (bp) Automated name-based View Maps
Cotton - HDC - 25 NAU2687 Marker 72.6 (cM) Automated name-based View Maps
NAU2580 Marker 46.6 Cotton - HDC - 25 CLU1295 Marker 72.9 (cM) Automated name-based View Maps
Cotton - TH - 6 NAU2580 Marker 52.1 (cM) Automated name-based View Maps
Cotton - HDC - 6 CLU1295 Marker 82.7 (cM) Automated name-based View Maps
GW12-800 Marker 46.8 Cotton - HDC - 25 GW12-800 Marker 73.1 (cM) Automated name-based View Maps
NAU6136 Marker 47.3 Cotton - TH - 16 NAU6136 Marker 81.5 (cM) Automated name-based View Maps
Cotton - HDC - 23 NAU6136 Marker 68.3 (cM) Automated name-based View Maps
Cotton - HDC - 16 NAU6136 Marker 45.3 (cM) Automated name-based View Maps
Cotton - E3 - 23 NAU6136 Marker 50.6 (cM) Automated name-based View Maps
Cotton - HDC - 25 NAU6136 Marker 73.5 (cM) Automated name-based View Maps
NAU6379 Marker 47.7 Cotton - E3 - 25 NAU6379 Marker 90.7 (cM) Automated name-based View Maps
Cotton - HDC - 25 NAU6379 Marker 73.9 (cM) Automated name-based View Maps
NAU6271 Marker 48 Cotton - HDC - 25 NAU6271 Marker 74.2 (cM) Automated name-based View Maps
NAU6398 Marker 48 Cotton - E3 - 25 NAU6398 Marker 84.7 (cM) Automated name-based View Maps
Cotton - HDC - 25 NAU6398 Marker 74.2 (cM) Automated name-based View Maps
NAU6613 Marker 48.1 Cotton - HDC - 25 NAU6613 Marker 74.3 (cM) Automated name-based View Maps
NAU6478 Marker 48.2 Cotton - HDC - 25 NAU6478 Marker 74.4 (cM) Automated name-based View Maps
NAU2238 Marker 48.2 Cotton - TH - 6 NAU2238 Marker 60 (cM) Automated name-based View Maps
Cotton - T3 - 25 NAU2238 Marker 55.97 (cM) Automated name-based View Maps
Cotton - HDC - 25 CLU3879 Marker 74.4 (cM) Automated name-based View Maps
Cotton - HDC - 6 CLU3879 Marker 87.5 (cM) Automated name-based View Maps
Cotton - T3 - 6 NAU2238 Marker 55.75 (cM) Automated name-based View Maps
NAU6387 Marker 48.2 Cotton - HDC - 25 NAU6387 Marker 74.4 (cM) Automated name-based View Maps
NAU6661 Marker 48.2 Cotton - HDC - 25 NAU6661 Marker 74.4 (cM) Automated name-based View Maps
TMG10-175 Marker 48.4 Cotton - HDC - 25 TMG10-175 Marker 74.8 (cM) Automated name-based View Maps
CIR150 Marker 48.4 Cotton - HDC - 25 CIR150 Marker 70 (cM) Automated name-based View Maps
Cotton - E3 - 25 CIR150 Marker 88.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 CIR150 Marker Cotton 41,297,544 - 41,297,689 (bp) Automated name-based View Maps
Cotton - GVc - 25 CIR150 Marker 84 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c25 CIR150 Marker 107.4 (cM) Automated name-based View Maps
NAU2565 Marker 48.6 Cotton - HDC - 25 CLU3942 Marker 75.4 (cM) Automated name-based View Maps
Cotton - E3 - 25 NAU2565 Marker 96 (cM) Automated name-based View Maps
NAU2388 Marker 48.7 Cotton - HDC - 25 CLU3942 Marker 75.4 (cM) Automated name-based View Maps
Cotton - E3 - 25 NAU2388 Marker 87.9 (cM) Automated name-based View Maps
NAU2104 Marker 48.7 No other positions
NAU2838 Marker 48.8 Cotton - Graimondii_physical - Gr_Chr10 NAU2838 Marker Cotton 36,024,165 - 36,025,052 (bp) Automated name-based View Maps
Cotton - HDC - 25 NAU2838 Marker 75.6 (cM) Automated name-based View Maps
NAU2954 Marker 49 Cotton - HDC - 23 CLU1396 Marker 117.1 (cM) Automated name-based View Maps
Cotton - HDC - 25 CLU1396 Marker 76 (cM) Automated name-based View Maps
Cotton - TH - 23 NAU2954 Marker 114.5 (cM) Automated name-based View Maps
Cotton - E3 - 23 NAU2954 Marker 98.2 (cM) Automated name-based View Maps