CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps c7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c7
Map Start: 0 cM
Map Stop: 230.1 cM
Features by Type:
106 Marker
10 QTL
116 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 116.       of 5 | Next
Cotton - PK - c7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Gate1DB07 Marker 184 Cotton - HDC - 7 Gate1DB07 Marker 121.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 Gate1DB07 Marker Cotton 4,294,236 - 4,294,414 (bp) Automated name-based View Maps
Gate1DH08 Marker 70.3 Cotton - Graimondii_physical - Gr_Chr09 Gate1DH08 Marker Cotton 55,133,214 - 55,133,882 (bp) Automated name-based View Maps
Cotton - HDC - 7 Gate1DH08 Marker 42.4 (cM) Automated name-based View Maps
Gate2DE01 Marker 139.2 Cotton - HDC - 7 Gate2DE01 Marker 82 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 Gate2DE01 Marker Cotton 43,112,062 - 43,112,748 (bp) Automated name-based View Maps
Gate3BD02 Marker 109.9 Cotton - Graimondii_physical - Gr_Chr08 Gate3BD02 Marker Cotton 1,726,851 - 1,727,559 (bp) Automated name-based View Maps
Cotton - HDC - 7 Gate3BD02 Marker 57.6 (cM) Automated name-based View Maps
Gate3CB09 Marker 69.1 Cotton - HDC - 7 Gate3CB09 Marker 42 (cM) Automated name-based View Maps
Cotton - PK - c10 Gate3CB09 Marker 102.6 (cM) Automated name-based View Maps
Cotton - HDC - 10 Gate3CB09 Marker 83.6 (cM) Automated name-based View Maps
Gate3DF04 Marker 220.2 Cotton - HDC - 7 Gate3DF04 Marker 147.2 (cM) Automated name-based View Maps
Gate4CD12 Marker 156.1 Cotton - PK - c3 Gate4CD12 Marker 54.7 (cM) Automated name-based View Maps
Cotton - HDC - 17 Gate4CD12 Marker 87.8 (cM) Automated name-based View Maps
Cotton - PK - c17 Gate4CD12 Marker 41.6 (cM) Automated name-based View Maps
Cotton - HDC - 7 Gate4CD12 Marker 99.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 Gate4CD12 Marker Cotton 12,405,315 - 12,405,586 (bp) Automated name-based View Maps
Cotton - HDC - 3 Gate4CD12 Marker 98.6 (cM) Automated name-based View Maps
P05_11 Marker 47.8 Cotton - PK - A01 P05_11 Marker 80.1 (cM) Automated name-based View Maps
Cotton - HDC - 7 P05_11 Marker 32 (cM) Automated name-based View Maps
Cotton - HDC - 13 P05_11 Marker 78 (cM) Automated name-based View Maps
PAR01F03 Marker 70.3 Cotton - Graimondii_physical - Gr_Chr09 pAR01F03 Marker Cotton 7,576,614 - 7,577,205 (bp) Automated name-based View Maps
Cotton - HDC - 7 pAR01F03 Marker 42.4 (cM) Automated name-based View Maps
pAR040 Marker 119.9 Cotton - HDC - 7 pAR040 Marker 62.4 (cM) Automated name-based View Maps
Cotton - HDC - 16 pAR040 Marker 47.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 pAR040 Marker Cotton 39,568,938 - 39,569,327 (bp) Automated name-based View Maps
Cotton - PK - c16 pAR040 Marker 52.8 (cM) Automated name-based View Maps
pAR049 Marker 50.2 Cotton - HDC - 4 pAR049 Marker 63.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 pAR049 Marker Cotton 10,974,827 - 10,975,558 (bp) Automated name-based View Maps
Cotton - HDC - 7 pAR049 Marker 33.6 (cM) Automated name-based View Maps
Cotton - PK - c4 pAR049 Marker 92.9 (cM) Automated name-based View Maps
PAR04D08 Marker 209.8 Cotton - HDC - 7 pAR04D08 Marker 140.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 pAR04D08 Marker Cotton 1,586,327 - 1,586,659 (bp) Automated name-based View Maps
Cotton - HDC - 7 pAR04D08 Marker 34.7 (cM) Automated name-based View Maps
PAR05G10 Marker 118.8 Cotton - HDC - 7 pAR05G10 Marker 61.3 (cM) Automated name-based View Maps
pAR078 Marker 11 Cotton - PK - c22 pAR078 Marker 44.9 (cM) Automated name-based View Maps
Cotton - HDC - 7 pAR078 Marker 7.4 (cM) Automated name-based View Maps
Cotton - GVc - 22 pAR078 Marker 67.9 (cM) Automated name-based View Maps
Cotton - HDC - 22 pAR078 Marker 38.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 pAR078 Marker 90 (cM) Automated name-based View Maps
PAR1_25 Marker 193.7 Cotton - HDC - 7 pAR01_25 Marker 129 (cM) Automated name-based View Maps
pAR10F12 Marker 17.7 Cotton - PK - c26 pAR10F12 Marker 72.4 (cM) Automated name-based View Maps
Cotton - HDC - 26 pAR10F12 Marker 92.6 (cM) Automated name-based View Maps
Cotton - HDC - 7 pAR10F12 Marker 11.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 pAR10F12 Marker Cotton 53,507,377 - 53,507,797 (bp) Automated name-based View Maps
pAR173 Marker 119.9 Cotton - PK - c16 pAR173 Marker 52.8 (cM) Automated name-based View Maps
Cotton - PK - c16 pAR173 Marker 42.8 (cM) Automated name-based View Maps
Cotton - HDC - 16 pAR173 Marker 47.9 (cM) Automated name-based View Maps
Cotton - HDC - 7 pAR173 Marker 62.4 (cM) Automated name-based View Maps
Cotton - HDC - 16 pAR173 Marker 39.4 (cM) Automated name-based View Maps
pAR199 Marker 121.4 Cotton - HDC - 7 pAR199 Marker 63.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 pAR199 Marker Cotton 32,357,789 - 32,358,554 (bp) Automated name-based View Maps
pAR237 Marker 62.6 Cotton - HDC - 25 pAR237 Marker 149.3 (cM) Automated name-based View Maps
Cotton - HDC - 7 pAR237 Marker 39.5 (cM) Automated name-based View Maps
Cotton - PK - c25 pAR237 Marker 5.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 pAR237 Marker Cotton 160,509 - 161,204 (bp) Automated name-based View Maps
pAR294 Marker 126 Cotton - Graimondii_physical - Gr_Chr01 pAR294 Marker Cotton 21,294,080 - 21,294,856 (bp) Automated name-based View Maps
Cotton - HDC - 7 pAR294 Marker 68.6 (cM) Automated name-based View Maps
pAR319 Marker 119.8 Cotton - PK - D02 pAR319 Marker 98.5 (cM) Automated name-based View Maps
Cotton - HDC - 7 pAR319 Marker 62.3 (cM) Automated name-based View Maps
Cotton - HDC - 21 pAR319 Marker 108.7 (cM) Automated name-based View Maps
pAR515 Marker 17.7 Cotton - Graimondii_physical - Gr_Chr01 pAR515 Marker Cotton 53,394,223 - 53,394,879 (bp) Automated name-based View Maps
Cotton - HDC - 7 pAR515 Marker 11.8 (cM) Automated name-based View Maps
pAR624 Marker 169.2 Cotton - Graimondii_physical - Gr_Chr08 pAR624 Marker Cotton 55,767,768 - 55,767,957 (bp) Automated name-based View Maps
Cotton - HDC - 7 pAR624 Marker 106.8 (cM) Automated name-based View Maps
Cotton - HDC - 16 pAR624 Marker 82.6 (cM) Automated name-based View Maps
Cotton - PK - c16 pAR624 Marker 91.4 (cM) Automated name-based View Maps
pAR711 Marker 46 Cotton - Graimondii_physical - Gr_Chr09 pAR711 Marker Cotton 65,619,876 - 65,620,798 (bp) Automated name-based View Maps
Cotton - HDC - 22 pAR711 Marker 54.2 (cM) Automated name-based View Maps
Cotton - HDC - 7 pAR711 Marker 30.8 (cM) Automated name-based View Maps
Cotton - PK - c22 pAR711 Marker 39.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 pAR711 Marker 76.5 (cM) Automated name-based View Maps
Cotton - GVc - 22 pAR711 Marker 50.3 (cM) Automated name-based View Maps
pAR887 Marker 119.6 Cotton - HDC - 7 pAR887 Marker 62.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 pAR887 Marker Cotton 34,372,771 - 34,373,212 (bp) Automated name-based View Maps
Cotton - PK - c16 pAR887 Marker 52.8 (cM) Automated name-based View Maps
Cotton - HDC - 16 pAR887 Marker 47.9 (cM) Automated name-based View Maps