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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-T3
(Reference Set)
Min.
Correspondences
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Maps 15
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - T3 [ View Map Set Info ]
Map Name: 15
Map Start: 0 cM
Map Stop: 118 cM
Features by Type:
98 Marker
98 Total

Map Features

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Items 1 to 25 of 98.       of 4 | Next
Cotton - T3 - 15
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BNL1454 Marker 82.34 Cotton - CH - 15 BNL1454 Marker 56.4 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL1454 Marker 63.1 (cM) Automated name-based View Maps
JESPR298 Marker 87.89 Cotton - TH - 15 JESPR298 Marker 65.2 (cM) Automated name-based View Maps
Cotton - HDC - 15 JESPR298 Marker 76.5 (cM) Automated name-based View Maps
Cotton - CH - 15 JESPR298 Marker 88 (cM) Automated name-based View Maps
Cotton - HDC - 15 JESPR298 Marker 57.7 (cM) Automated name-based View Maps
Cotton - E3 - 15 JESPR298 Marker 64.4 (cM) Automated name-based View Maps
CM76 Marker 95.12 Cotton - HDC - 15 CLU154 Marker 50.8 (cM) Automated name-based View Maps
DPL0402 Marker 99.45 Cotton - HDC - 15 DPL0402 Marker 46.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 DPL0402 Marker Cotton 60,397,030 - 60,397,631 (bp) Automated name-based View Maps
JESPR152 Marker 100.42 Cotton - TH - 15 JESPR152 Marker 105.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 JESPR152 Marker 19 (cM) Automated name-based View Maps
Cotton - HDC - 15 JESPR152 Marker 45.7 (cM) Automated name-based View Maps
Cotton - GVc - 15 JESPR152 Marker 23.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 JESPR152 Marker Cotton 60,661,466 - 60,661,937 (bp) Automated name-based View Maps
NAU2343 Marker 101.53 Cotton - HDC - 15 NAU2343 Marker 44.2 (cM) Automated name-based View Maps
Gh565 Marker 104.69 Cotton - E3 - 15 Gh565 Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 15 Gh565 Marker 39.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 Gh565 Marker Cotton 61,032,044 - 61,032,580 (bp) Automated name-based View Maps
MUSS085 Marker 106.52 Cotton - HDC - 15 MUSS085 Marker 37.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 MUSS085 Marker Cotton 61,289,827 - 61,290,457 (bp) Automated name-based View Maps
HAU0080 Marker 109.76 Cotton - HDC - 15 CLU721 Marker 30.3 (cM) Automated name-based View Maps
Cotton - HDC - 15 HAU0080 Marker 32.5 (cM) Automated name-based View Maps
MUSS572 Marker 110.79 Cotton - E3 - 13 MUSS572 Marker 118.3 (cM) Automated name-based View Maps
Cotton - HDC - 13 CLU3512 Marker 62.1 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU3512 Marker 31.1 (cM) Automated name-based View Maps
DPL0504 Marker 0 Cotton - HDC - 15 DPL0504 Marker 144.5 (cM) Automated name-based View Maps
MUCS152 Marker 111.67 Cotton - HDC - 15 CLU526 Marker 29.1 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU629 Marker 28.2 (cM) Automated name-based View Maps
Cotton - CH - 15 MUCS152 Marker 10.5 (cM) Automated name-based View Maps
Cotton - E3 - 15 MUCS152 Marker 14.9 (cM) Automated name-based View Maps
MGHES43 Marker 6.26 Cotton - HDC - 15 MGHES43 Marker 138.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 MGHES43 Marker Cotton 1,194,798 - 1,194,993 (bp) Automated name-based View Maps
MUCS141 Marker 111.78 Cotton - E3 - 15 MUCS141 Marker 14.4 (cM) Automated name-based View Maps
Cotton - CH - 15 MUCS141 Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU2788 Marker 29.4 (cM) Automated name-based View Maps
CIR105 Marker 16.31 Cotton - Guazuncho2xVH8-RIL - c15 CIR105a Marker 71.73 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 CIR105 Marker 164.7 (cM) Automated name-based View Maps
Cotton - HDC - 15 CIR105 Marker 128.2 (cM) Automated name-based View Maps
Cotton - GVc - 15 CIR105 Marker 119 (cM) Automated name-based View Maps
Cotton - CH - 15 CIR105 Marker 168.2 (cM) Automated name-based View Maps
MUSS598 Marker 111.88 No other positions
CIR158 Marker 26.19 Cotton - Graimondii_physical - Gr_Chr02 CIR158 Marker Cotton 11,493,619 - 11,493,999 (bp) Automated name-based View Maps
Cotton - HDC - 15 CIR158 Marker 118.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 CIR158 Marker 132.2 (cM) Automated name-based View Maps
Cotton - GVc - 15 CIR158 Marker 90.9 (cM) Automated name-based View Maps
Cotton - E3 - 15 CIR158 Marker 103.2 (cM) Automated name-based View Maps
MUCS410 Marker 111.96 Cotton - HDC - 15 CLU2788 Marker 29.4 (cM) Automated name-based View Maps
Cotton - E3 - 15 MUCS410 Marker 14.4 (cM) Automated name-based View Maps
DPL0051 Marker 32.18 Cotton - Graimondii_physical - Gr_Chr02 DPL0051 Marker Cotton 7,886,074 - 7,886,773 (bp) Automated name-based View Maps
Cotton - HDC - 15 DPL0051 Marker 112.3 (cM) Automated name-based View Maps
MUCS422 Marker 112.22 Cotton - HDC - 15 CLU629 Marker 28.2 (cM) Automated name-based View Maps
Cotton - E3 - 15 MUCS422 Marker 14.9 (cM) Automated name-based View Maps
CIR311 Marker 34 Cotton - CH - 15 CIR311 Marker 135.5 (cM) Automated name-based View Maps
Cotton - HDC - 15 CIR311 Marker 110.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 CIR311 Marker 142 (cM) Automated name-based View Maps
Cotton - GVc - 15 CIR311 Marker 101.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 CIR311 Marker Cotton 7,878,401 - 7,878,882 (bp) Automated name-based View Maps
MUSB0537 Marker 113.04 Cotton - Graimondii_physical - Gr_Chr02 MUSB0537 Marker Cotton 62,053,444 - 62,054,785 (bp) Automated name-based View Maps
Cotton - HDC - 15 MUSB0537 Marker 28 (cM) Automated name-based View Maps
JESPR243 Marker 35.35 Cotton - HDC - 15 CLU14 Marker 106.1 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU14 Marker 55.2 (cM) Automated name-based View Maps
Cotton - CH - 15 JESPR243 Marker 119.8 (cM) Automated name-based View Maps
Cotton - HDC - 17 CLU14 Marker 74.4 (cM) Automated name-based View Maps
Cotton - HDC - 2 CLU14 Marker 64.4 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU14 Marker 94.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 JESPR243 Marker 137.6 (cM) Automated name-based View Maps
Cotton - HDC - 14 CLU14 Marker 75.5 (cM) Automated name-based View Maps
Cotton - GVc - 15 JESPR243 Marker 96.7 (cM) Automated name-based View Maps
Cotton - E3 - 15 JESPR243 Marker 109.1 (cM) Automated name-based View Maps
CIR009 Marker 114.21 Cotton - T3 - 1 CIR009 Marker 125.89 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 CIR009 Marker 0 (cM) Automated name-based View Maps
Cotton - GVc - 1 CIR009 Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 CIR009a Marker 4.63 (cM) Automated name-based View Maps
Cotton - HDC - 1 CIR009 Marker 18.5 (cM) Automated name-based View Maps
Cotton - HDC - 15 CIR009 Marker 26.3 (cM) Automated name-based View Maps
Cotton - GVc - 15 CIR009 Marker 0 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 CIR009 Marker Cotton 62,444,513 - 62,444,847 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 CIR009 Marker 0 (cM) Automated name-based View Maps
TMB0694 Marker 39.88 Cotton - HDC - 15 TMB0694 Marker 107.1 (cM) Automated name-based View Maps
Cotton - T3 - 7 TMB0694 Marker 87.41 (cM) Automated name-based View Maps
Cotton - HDC - 7 TMB0694 Marker 66.5 (cM) Automated name-based View Maps