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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-Guazuncho2xVH8-BC2
(Reference Set)
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Correspondences
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Maps c2
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - Guazuncho2xVH8-BC2 [ View Map Set Info ]
Map Name: c2
Map Start: 0 cM
Map Stop: 108.8 cM
Features by Type:
24 Marker
24 Total

Map Features

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Items 1 to 24 of 24.
Cotton - Guazuncho2xVH8-BC2 - c2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BNL1434 Marker 0 Cotton - T3 - 2 BNL1434 Marker 95.17 (cM) Automated name-based View Maps
Cotton - CH - 2 BNL1434 Marker 88.1 (cM) Automated name-based View Maps
Cotton - E3 - 2 BNL1434 Marker 37.6 (cM) Automated name-based View Maps
Cotton - GVc - 2 BNL1434 Marker 15.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c9 BNL1434 Marker 16.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c2 BNL1434b Marker 10.76 (cM) Automated name-based View Maps
Cotton - HDC - 2 BNL1434 Marker 89.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 BNL1434 Marker 15.5 (cM) Automated name-based View Maps
E5M6_252 Marker 14.7 Cotton - GVc - 2 E5M6_252 Marker 22.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E5M6_252 Marker 35.8 (cM) Automated name-based View Maps
Cotton - HDC - 2 E5M6_252 Marker 81.9 (cM) Automated name-based View Maps
BNL1897 Marker 15.1 Cotton - TH - 2 BNL1897 Marker 41.9 (cM) Automated name-based View Maps
Cotton - GVc - 2 BNL1897 Marker 23.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 BNL1897 Marker 35.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c2 BNL1897a Marker 18.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c14 BNL1897 Marker 28.3 (cM) Automated name-based View Maps
Cotton - HDC - 14 BNL1897 Marker 95.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 BNL1897 Marker Cotton 5,570,077 - 5,570,292 (bp) Automated name-based View Maps
Cotton - T3 - 2 BNL1897 Marker 86.46 (cM) Automated name-based View Maps
Cotton - E3 - 2 BNL1897 Marker 59.9 (cM) Automated name-based View Maps
Cotton - CH - 2 BNL1897 Marker 69.1 (cM) Automated name-based View Maps
Cotton - HDC - 2 BNL1897 Marker 80.7 (cM) Automated name-based View Maps
Cotton - GVc - 14 BNL1897 Marker 32.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c14 BNL1897 Marker 18.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c14 BNL1897b Marker 36 (cM) Automated name-based View Maps
BNL3590 Marker 27.8 Cotton - E3 - 2 BNL3590 Marker 76.8 (cM) Automated name-based View Maps
Cotton - CH - 17 BNL3590 Marker 72.6 (cM) Automated name-based View Maps
Cotton - TH - 2 BNL3590 Marker 50.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 BNL3590 Marker 57.4 (cM) Automated name-based View Maps
Cotton - HDC - 17 BNL3590 Marker 52.9 (cM) Automated name-based View Maps
Cotton - CH - 2 BNL3590 Marker 45.3 (cM) Automated name-based View Maps
Cotton - T3 - 2 BNL3590 Marker 60.68 (cM) Automated name-based View Maps
Cotton - T3 - 17 BNL3590 Marker 43.39 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c17 BNL3590 Marker 79 (cM) Automated name-based View Maps
Cotton - HDC - 2 BNL3590 Marker 65.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 BNL3590 Marker Cotton 18,634,806 - 18,635,181 (bp) Automated name-based View Maps
Cotton - TH - 17 BNL3590 Marker 45.4 (cM) Automated name-based View Maps
Cotton - TH - 17 BNL3590 Marker 79.7 (cM) Automated name-based View Maps
Cotton - HDC - 17 BNL3590 Marker 70.7 (cM) Automated name-based View Maps
Cotton - GVc - 2 BNL3590 Marker 36.3 (cM) Automated name-based View Maps
E1M1_350 Marker 28.8 No other positions
E6M6_98 Marker 28.8 No other positions
E5M6_181 Marker 28.8 No other positions
E5M1_224 Marker 29.3 Cotton - GVc - 2 E5M1_224 Marker 42.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E5M1_224 Marker 58.9 (cM) Automated name-based View Maps
Cotton - HDC - 2 E5M1_224 Marker 63.5 (cM) Automated name-based View Maps
E3M6_500 Marker 29.3 Cotton - GVc - 2 E3M6_500 Marker 34.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E3M6_500 Marker 59.1 (cM) Automated name-based View Maps
Cotton - HDC - 2 E3M6_500 Marker 71.3 (cM) Automated name-based View Maps
E8M2_160 Marker 31.5 No other positions
E2M5_134 Marker 31.5 Cotton - GVc - 2 E2M5_134 Marker 38.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E2M5_134 Marker 65.9 (cM) Automated name-based View Maps
Cotton - HDC - 2 E2M5_134 Marker 64.6 (cM) Automated name-based View Maps
E2M6_370 Marker 32.3 Cotton - GVc - 2 E2M6_370 Marker 44.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E2M6_370 Marker 76.8 (cM) Automated name-based View Maps
Cotton - HDC - 2 E2M6_370 Marker 64.7 (cM) Automated name-based View Maps
E5M7_440 Marker 37.1 Cotton - Guazuncho2xVH8-BC1 - c2 E5M7_440 Marker 81.3 (cM) Automated name-based View Maps
Cotton - HDC - 2 E5M7_440 Marker 58.4 (cM) Automated name-based View Maps
Cotton - GVc - 2 E5M7_440 Marker 48.2 (cM) Automated name-based View Maps
E7M1_138 Marker 38.6 Cotton - HDC - 2 E7M1_138 Marker 55.5 (cM) Automated name-based View Maps
Cotton - GVc - 2 E7M1_138 Marker 51.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E7M1_138 Marker 92.7 (cM) Automated name-based View Maps
E3M8_470 Marker 38.6 Cotton - GVc - 2 E3M8_470 Marker 52.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E3M8_470 Marker 92.7 (cM) Automated name-based View Maps
Cotton - HDC - 2 E3M8_470 Marker 54.7 (cM) Automated name-based View Maps
E5M8_460 Marker 38.6 Cotton - HDC - 2 E5M8_460 Marker 56.3 (cM) Automated name-based View Maps
Cotton - GVc - 2 E5M8_460 Marker 50.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E5M8_460 Marker 95.2 (cM) Automated name-based View Maps
E3M2_208 Marker 38.6 Cotton - GVc - 2 E3M2_208 Marker 50.5 (cM) Automated name-based View Maps
Cotton - HDC - 2 E3M2_208 Marker 56.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E3M2_208 Marker 95.2 (cM) Automated name-based View Maps
Cotton - GVc - 2 E3M2_208 Marker 47.2 (cM) Automated name-based View Maps
E8M1_420 Marker 38.6 Cotton - Guazuncho2xVH8-BC1 - c2 E8M1_420 Marker 97.7 (cM) Automated name-based View Maps
Cotton - HDC - 2 E8M1_420 Marker 52.4 (cM) Automated name-based View Maps
Cotton - GVc - 2 E8M1_420 Marker 54.8 (cM) Automated name-based View Maps
E2M5_129 Marker 39.1 No other positions
E3M5_103 Marker 42.6 Cotton - HDC - 2 E3M5_103 Marker 48 (cM) Automated name-based View Maps
Cotton - GVc - 2 E3M5_103 Marker 59.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E3M5_103 Marker 111.8 (cM) Automated name-based View Maps
E6M3_103 Marker 62.1 Cotton - Guazuncho2xVH8-BC1 - c2 E6M3_103 Marker 156.4 (cM) Automated name-based View Maps
Cotton - HDC - 2 E6M3_103 Marker 17.8 (cM) Automated name-based View Maps
Cotton - GVc - 2 E6M3_103 Marker 90 (cM) Automated name-based View Maps
E4M3_183 Marker 73.8 No other positions
E1M8_345 Marker 86 Cotton - Guazuncho2xVH8-BC1 - c2 E1M8_345 Marker 163.3 (cM) Automated name-based View Maps
Cotton - GVc - 2 E1M8_345 Marker 93.8 (cM) Automated name-based View Maps
Cotton - HDC - 2 E1M8_345 Marker 14.1 (cM) Automated name-based View Maps
E4M4_350 Marker 108.8 Cotton - GVc - 2 E4M4_350 Marker 107.9 (cM) Automated name-based View Maps
Cotton - HDC - 2 E4M4_350 Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 E4M4_350 Marker 207.2 (cM) Automated name-based View Maps