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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-Guazuncho2xVH8-BC2
(Reference Set)
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Correspondences
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Maps c15
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - Guazuncho2xVH8-BC2 [ View Map Set Info ]
Map Name: c15
Map Start: 0 cM
Map Stop: 126.2 cM
Features by Type:
14 Marker
14 Total

Map Features

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Items 1 to 14 of 14.
Cotton - Guazuncho2xVH8-BC2 - c15
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BNL2440 Marker 0 Cotton - E3 - 15 BNL2440 Marker 16.7 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL2440 Marker 7.1 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL2440 Marker 18 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 BNL2440b Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c1 BNL2440 Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c15 BNL2440a Marker 3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 BNL2440 Marker Cotton 61,637,363 - 61,637,761 (bp) Automated name-based View Maps
Cotton - HDC - 15 BNL2440 Marker 32.1 (cM) Automated name-based View Maps
Cotton - TH - 15 BNL2440 Marker 123.4 (cM) Automated name-based View Maps
Cotton - HDC - 1 BNL2440 Marker 26.3 (cM) Automated name-based View Maps
Cotton - CH - 1 BNL2440 Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL2440 Marker 25.4 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL2440 Marker 6.9 (cM) Automated name-based View Maps
Cotton - PK - c1 BNL2440 Marker 9.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL2440 Marker 6.6 (cM) Automated name-based View Maps
E7M5_121 Marker 13.4 Cotton - HDC - 15 E7M5_121 Marker 44.2 (cM) Automated name-based View Maps
Cotton - GVc - 15 E7M5_121 Marker 20.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 E7M5_121 Marker 22.9 (cM) Automated name-based View Maps
E4M4_335 Marker 41.4 No other positions
E1M1_174 Marker 43.5 Cotton - HDC - 15 E1M1_174 Marker 66.5 (cM) Automated name-based View Maps
Cotton - GVc - 15 E1M1_174 Marker 44.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 E1M1_174 Marker 66.1 (cM) Automated name-based View Maps
E4M7_540 Marker 54.1 Cotton - HDC - 15 E4M7_540 Marker 72.4 (cM) Automated name-based View Maps
Cotton - GVc - 15 E4M7_540 Marker 50.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 E4M7_540 Marker 87.5 (cM) Automated name-based View Maps
E5M8_152 Marker 58 Cotton - Guazuncho2xVH8-BC1 - c15 E5M8_152 Marker 93.7 (cM) Automated name-based View Maps
Cotton - GVc - 15 E5M8_152 Marker 57.6 (cM) Automated name-based View Maps
Cotton - HDC - 15 E5M8_152 Marker 79.1 (cM) Automated name-based View Maps
E1M6_140 Marker 58 Cotton - Guazuncho2xVH8-BC1 - c15 E1M6_140 Marker 93.7 (cM) Automated name-based View Maps
Cotton - HDC - 15 E1M6_140 Marker 79.1 (cM) Automated name-based View Maps
Cotton - GVc - 15 E1M6_140 Marker 56.8 (cM) Automated name-based View Maps
BNL1350 Marker 62.8 Cotton - T3 - 15 BNL1350 Marker 58.61 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL1350 Marker 103.3 (cM) Automated name-based View Maps
Cotton - HDC - 1 BNL1350 Marker 69.9 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL1350 Marker 66.9 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL1350 Marker 70.4 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL1350 Marker 82.7 (cM) Automated name-based View Maps
Cotton - E3 - 1 BNL1350 Marker 27 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c15 BNL1350b Marker 42.84 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 BNL1350a Marker 62.52 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL1350 Marker 57.33 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL1350 Marker 96.6 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL1350 Marker 77.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL1350 Marker 154.1 (cM) Automated name-based View Maps
BNL3090 Marker 69.9 Cotton - Guazuncho2xVH8-BC2 - c1 BNL3090 Marker 86.1 (cM) Automated name-based View Maps
Cotton - PK - c15 BNL3090 Marker 89.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL3090 Marker 115.9 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL3090 Marker 105.5 (cM) Automated name-based View Maps
Cotton - T3 - 15 BNL3090 Marker 51.86 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL3090 Marker 168.7 (cM) Automated name-based View Maps
Cotton - E3 - 1 BNL3090 Marker 29.8 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL3090 Marker 79.3 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL3090 Marker 47.9 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL3090 Marker 111.6 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL3090 Marker 95.1 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL3090 Marker 47.64 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL3090 Marker 87.5 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL3090 Marker 79.4 (cM) Automated name-based View Maps
Cotton - TH - 15 BNL3090 Marker 54.7 (cM) Automated name-based View Maps
Cotton - PK - c16 BNL3090 Marker 52.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 BNL3090a Marker 66.28 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL3090 Marker 90.8 (cM) Automated name-based View Maps
Cotton - TH - 1 BNL3090 Marker 63.6 (cM) Automated name-based View Maps
Cotton - HDC - 1 BNL3090 Marker 80.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c15 BNL3090b Marker 47.81 (cM) Automated name-based View Maps
BNL1667 Marker 88.5 Cotton - HDC - 14 CLU14 Marker 75.5 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU14 Marker 94.9 (cM) Automated name-based View Maps
Cotton - PK - c14 BNL1667 Marker 73.4 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL1667 Marker 109.6 (cM) Automated name-based View Maps
Cotton - CH - 1 BNL1667 Marker 97.4 (cM) Automated name-based View Maps
Cotton - PK - c2 BNL1667 Marker 85.9 (cM) Automated name-based View Maps
Cotton - HDC - 17 CLU14 Marker 74.4 (cM) Automated name-based View Maps
Cotton - PK - c2 BNL1667 Marker 87.7 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL1667 Marker 97.4 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU14 Marker 106.1 (cM) Automated name-based View Maps
Cotton - T3 - 15 BNL1667 Marker 41.51 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL1667 Marker 34.76 (cM) Automated name-based View Maps
Cotton - TH - 15 BNL1667 Marker 48.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL1667 Marker 137.6 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL1667 Marker 122.4 (cM) Automated name-based View Maps
Cotton - HDC - 2 CLU14 Marker 64.4 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU14 Marker 55.2 (cM) Automated name-based View Maps
E2M3_255 Marker 93.9 Cotton - GVc - 15 E2M3_255 Marker 103.4 (cM) Automated name-based View Maps
Cotton - HDC - 15 E2M3_255 Marker 112.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 E2M3_255 Marker 144.1 (cM) Automated name-based View Maps
E8M3_132 Marker 99.1 Cotton - Guazuncho2xVH8-BC1 - c15 E8M3_132 Marker 154.2 (cM) Automated name-based View Maps
Cotton - GVc - 15 E8M3_132 Marker 111.8 (cM) Automated name-based View Maps
Cotton - HDC - 15 E8M3_132 Marker 121 (cM) Automated name-based View Maps
E2M7_400 Marker 105 Cotton - Guazuncho2xVH8-BC1 - c15 E2M7_400 Marker 158.5 (cM) Automated name-based View Maps
Cotton - HDC - 15 E2M7_400 Marker 125 (cM) Automated name-based View Maps
Cotton - GVc - 15 E2M7_400 Marker 115.8 (cM) Automated name-based View Maps
E1M3_182 Marker 126.2 Cotton - Guazuncho2xVH8-BC1 - c15 E1M3_182 Marker 176.5 (cM) Automated name-based View Maps
Cotton - GVc - 15 E1M3_182 Marker 135.1 (cM) Automated name-based View Maps
Cotton - HDC - 15 E1M3_182 Marker 144.3 (cM) Automated name-based View Maps