CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-ref_UPA402xUF676
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - ref_UPA402xUF676 [ View Map Set Info ]
Map Name: LG3
Map Start: 0 cM
Map Stop: 88.5 cM
Features by Type:
56 Marker
56 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 56.       of 3 | Next
Cocoa - ref_UPA402xUF676 - LG3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR65 Marker 46.9 Cocoa - consensus_disease_res - LG3 mTcCIR65 Marker 46.9 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR65 Marker 46.9 (cM) Automated name-based View Maps
mTcCIR78 Marker 46.2 Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR78 Marker 43.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR78 Marker 46.2 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR78 Marker 38.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR78 Marker 19,330,503 - 19,331,047 (bp) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR78 Marker 46.2 (cM) Automated name-based View Maps
mTcCIR81 Marker 81.4 Cocoa - Physical map - Tc03 mTcCIR81 Marker 25,403,469 - 25,403,864 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR81 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR81 Marker 81.4 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR81 Marker 81.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR81 Marker 76.9 (cM) Automated name-based View Maps
mTcCIR82 Marker 30.6 Cocoa - consensus_disease_res - LG3 mTcCIR82 Marker 30.6 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR82 Marker 30.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR82 Marker 30.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR82 Marker 16,035,201 - 16,035,687 (bp) Automated name-based View Maps
mTcCIR105 Marker 4 Cocoa - consensus_disease_res - LG3 mTcCIR105 Marker 4 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR105 Marker 4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR105 Marker 4.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR105 Marker 1,078,038 - 1,078,541 (bp) Automated name-based View Maps
mTcCIR120 Marker 6.3 Cocoa - TSH516 - LG3 mTcCIR120 Marker 79.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR120 Marker 7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR120 Marker 6.3 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR120 Marker 6.3 (cM) Automated name-based View Maps
mTcCIR131 Marker 72.7 Cocoa - Physical map - Tc03 mTcCIR131 Marker 24,475,823 - 24,476,219 (bp) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR131 Marker 72.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR131 Marker 72.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR131 Marker 68.6 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR131 Marker 9.1 (cM) Automated name-based View Maps
mTcCIR133 Marker 18.3 Cocoa - test - LG3 mTcCIR133 Marker 18.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR133 Marker 18.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR133 Marker 18.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR133 Marker 11,777,597 - 11,778,122 (bp) Automated name-based View Maps
mTcCIR135 Marker 70.5 Cocoa - consensus_disease_res - LG3 mTcCIR135 Marker 70.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR135 Marker 66.3 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR135 Marker 70.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR135 Marker 15.9 (cM) Automated name-based View Maps
mTcCIR140 Marker 72.3 Cocoa - test - LG3 mTcCIR140 Marker 72.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR140 Marker 68.1 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR140 Marker 13.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR140 Marker 72.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR140 Marker 23,853,792 - 23,854,106 (bp) Automated name-based View Maps
mTcCIR144 Marker 77.7 Cocoa - test - LG3 mTcCIR144 Marker 77.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR144 Marker 73.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR144 Marker 77.7 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR144 Marker 7.6 (cM) Automated name-based View Maps
mTcCIR153 Marker 9 Cocoa - TSH516 - LG3 mTcCIR153 Marker 77.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR153 Marker 9.2 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR153 Marker 9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR153 Marker 9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR153 Marker 2,362,791 - 2,363,149 (bp) Automated name-based View Maps
mTcCIR164 Marker 35.6 Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR164 Marker 33.8 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR164 Marker 35.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR164 Marker 16,443,240 - 16,443,733 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR164 Marker 35.6 (cM) Automated name-based View Maps
mTcCIR167 Marker 59.2 Cocoa - Physical map - Tc03 mTcCIR167 Marker 20,966,198 - 20,966,609 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR167 Marker 59.2 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR167 Marker 59.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR167 Marker 54.6 (cM) Automated name-based View Maps
mTcCIR173 Marker 14.9 Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR173 Marker 15.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR173 Marker 14.9 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR173 Marker 14.9 (cM) Automated name-based View Maps
mTcCIR175 Marker 38.1 Cocoa - consensus_disease_res - LG3 mTcCIR175 Marker 38.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR175 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR175 Marker 48.6 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR175 Marker 38.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR175 Marker 16,856,669 - 16,857,138 (bp) Automated name-based View Maps
mTcCIR180 Marker 27.5 Cocoa - consensus_disease_res - LG3 mTcCIR180 Marker 27.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR180 Marker 58.3 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR180 Marker 27.5 (cM) Automated name-based View Maps
mTcCIR192 Marker 14.8 Cocoa - test - LG3 mTcCIR192 Marker 14.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR192 Marker 7,678,237 - 7,678,376 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR192 Marker 15.2 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR192 Marker 68.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR192 Marker 14.8 (cM) Automated name-based View Maps
mTcCIR198 Marker 8.2 Cocoa - Physical map - Tc03 mTcCIR198 Marker 2,127,273 - 2,127,687 (bp) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR198 Marker 8.2 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR198 Marker 75.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR198 Marker 8.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR198 Marker 8.2 (cM) Automated name-based View Maps
mTcCIR202 Marker 76.8 Cocoa - Physical map - Tc03 mTcCIR202 Marker 24,666,853 - 24,667,215 (bp) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR202 Marker 76.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR202 Marker 72.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR202 Marker 76.8 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR202 Marker 8.3 (cM) Automated name-based View Maps
mTcCIR204 Marker 20.8 Cocoa - TSH516 - LG3 mTcCIR204 Marker 62.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR204 Marker 20.8 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR204 Marker 20.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR204 Marker 12,762,837 - 12,763,371 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR204 Marker 20.5 (cM) Automated name-based View Maps
mTcCIR219 Marker 50.2 Cocoa - Physical map - Tc03 mTcCIR219 Marker 20,447,195 - 20,447,481 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR219 Marker 47.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR219 Marker 31.9 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR219 Marker 50.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR219 Marker 50.2 (cM) Automated name-based View Maps
mTcCIR226 Marker 72.2 Cocoa - TSH516 - LG3 mTcCIR226 Marker 9.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR226 Marker 68.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR226 Marker 72.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR226 Marker 24,404,592 - 24,404,849 (bp) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR226 Marker 72.2 (cM) Automated name-based View Maps
mTcCIR247 Marker 16.6 Cocoa - consensus_disease_res - LG3 mTcCIR247 Marker 16.6 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR247 Marker 65.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR247 Marker 11,112,356 - 11,112,493 (bp) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR247 Marker 16.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR247 Marker 17.1 (cM) Automated name-based View Maps
mTcCIR254 Marker 68.5 Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR254 Marker 64.5 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR254 Marker 68.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR254 Marker 68.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR254 Marker 16.2 (cM) Automated name-based View Maps