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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-S52xCatongo
(Reference Set)
Min.
Correspondences
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Maps LG2
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - S52xCatongo [ View Map Set Info ]
Map Name: LG2
Map Start: 0 cM
Map Stop: 112.8 cM
Features by Type:
9 Marker
5 QTL
14 Total

Map Features

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Items 1 to 14 of 14.
Cocoa - S52xCatongo - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR3 Marker 0 Cocoa - (Sca6xH)xC1 - LG2 mTcCIR3 Marker 17.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR3 Marker 25 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR3 Marker 16.4 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG2 mTcCIR3 Marker 15.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
mTcCIR11 Marker 82.8 Cocoa - IMC78xCatongo - LG2 mTcCIR11 Marker 95.9 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR11 Marker 89.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR11 Marker 89.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR11 Marker 89.6 (cM) Automated name-based View Maps
cTcCIR74 Marker 55.6 Cocoa - ref_UPA402xUF676 - LG2 cTcCIR74 Marker 59.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 cTcCIR74 Marker 59.3 (cM) Automated name-based View Maps
Cocoa - test - LG2 cTcCIR74 Marker 59.3 (cM) Automated name-based View Maps
cTcCIR249 Marker 28.8 Cocoa - test - LG2 cTcCIR249 Marker 46.2 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG2 cTcCIR249 Marker 52.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 cTcCIR249 Marker 46.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 cTcCIR249 Marker 46.2 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG2 cTcCIR249 Marker 40.2 (cM) Automated name-based View Maps
cTcCIR76 Marker 112.8 Cocoa - ref_UPA402xUF676 - LG2 cTcCIR76 Marker 75.7 (cM) Automated name-based View Maps
Cocoa - test - LG2 cTcCIR76 Marker 75.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 cTcCIR76 Marker 75.7 (cM) Automated name-based View Maps
gTcCIR151 Marker 89.8 Cocoa - Physical map - Tc02 gTcCIR151 Marker 27,542,571 - 27,542,982 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 gTcCIR151 Marker 101.1 (cM) Automated name-based View Maps
Cocoa - test - LG2 gTcCIR151 Marker 100.9 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG2 gTcCIR151 Marker 112.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 gTcCIR151 Marker 100.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 gTcCIR151 Marker 100.9 (cM) Automated name-based View Maps
AFLP_SxC12/27 Marker 41.7 No other positions
AFLP_SxC50/5 Marker 48.7 No other positions
AFLP_SxC12/11 Marker 73.5 No other positions
SxC_BLG_lg2 QTL 83 - 96 No other positions
SxC_OVN_lg2a QTL 0 - 29 No other positions
SxC_OVN_lg2b QTL 74 - 87 No other positions
SxC_PW_lg2 QTL 33 - 49 No other positions
SxC_TC_lg2 QTL 74 - 112 No other positions