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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rice-Synthethic_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Rice - Synthethic_map [ View Map Set Info ]
Map Name: 4
Map Start: 0 bp
Map Stop: 35.5 bp
Features by Type:
168 Marker
77 QTL
245 Total

Map Features

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Items 1 to 25 of 244.       of 10 | Next
Rice - Synthethic_map - 4
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
B373B Marker 21.228 - 21.231 Maize - Physical_map_IBM2 - 10 B373B Marker 116.64 (bp) Automated name-based, Automated name-based View Maps
"OsAMT1;1" Marker 25.501 - 25.503 No other positions
B383E Marker 27.358 - 27.361 Maize - Physical_map_IBM2 - 10 B383E Marker 134.44 (bp) Automated name-based, Automated name-based View Maps
RG908 Marker 13.635 No other positions
CSU48 Marker 34.639 No other positions
B364E Marker 6.225 - 6.226 Maize - Physical_map_IBM2 - 2 B364E Marker 101.39 (bp) Automated name-based, Automated name-based View Maps
B382B Marker 24.506 - 24.508 Maize - Physical_map_IBM2 - 10 B382B Marker 127.29 (bp) Automated name-based, Automated name-based View Maps
C56 Marker 1.116 No other positions
B398B Marker 32.342 Maize - Physical_map_IBM2 - 10 B398B Marker 143.74 (bp) Automated name-based, Automated name-based View Maps
RM303 Marker 28.575 No other positions
B374E Marker 22.088 - 22.093 Maize - Physical_map_IBM2 - 2 B374E Marker 47.79 (bp) Automated name-based, Automated name-based View Maps
"OsTIP3;2" Marker 26.38 - 26.382 No other positions
B390E Marker 28.901 - 28.903 Maize - Physical_map_IBM2 - 10 B390E Marker 136.27 (bp) Automated name-based, Automated name-based View Maps
RG449 Marker 17.696 No other positions
AGG_CAG7 Marker 34.828 No other positions
B366E Marker 9.191 - 9.196 Maize - Physical_map_IBM2 - 5 B366E Marker 210.06 (bp) Automated name-based, Automated name-based View Maps
OsPT5 Marker 5.811 - 5.813 No other positions
B382E Marker 24.568 - 24.571 Maize - Physical_map_IBM2 - 10 B382E Marker 127.27 (bp) Automated name-based, Automated name-based View Maps
CDO241 Marker 3.572 No other positions
B397E Marker 32.357 - 32.359 Maize - Physical_map_IBM2 - 2 B397E Marker 7.05 (bp) Automated name-based, Automated name-based View Maps
RM3474 Marker 29.709 No other positions
B373E Marker 22.583 - 22.592 Maize - Physical_map_IBM2 - 10 B373E Marker 121.74 - 121.75 (bp) Automated name-based, Automated name-based View Maps
"OsTIP5;1" Marker 27.576 - 27.577 No other positions
B392B Marker 29.214 Maize - Physical_map_IBM2 - 10 B392B Marker 134.59 (bp) Automated name-based, Automated name-based View Maps
RG788 Marker 20.087 No other positions