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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-(Sca6xH)xC1
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - (Sca6xH)xC1 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 67.80 cM
Features by Type:
20 Marker
3 QTL
23 Total

Map Features

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Items 1 to 23 of 23.
Cocoa - (Sca6xH)xC1 - LG6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AFLP_SxHxC9/9 Marker 40.30 No other positions
AFLP_SxHxC9/5 Marker 29.40 No other positions
AFLP_SxHxC8/10 Marker 23.80 No other positions
AFLP_SxHxC8/6 Marker 22.00 No other positions
AFLP_SxHxC12/6 Marker 17.00 No other positions
mTcCIR53 Marker 12.30 Cocoa - test - LG6 mTcCIR53 Marker 12.80 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR53 Marker 10.50 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR53 Marker 12.80 (cM) Automated name-based View Maps
AFLP_SxHxC7/8 Marker 11.70 No other positions
AFLP_SxHxC15/9 Marker 10.90 No other positions
AFLP_SxHxC13/11 Marker 10.80 No other positions
AFLP_SxHxC4/12 Marker 10.50 No other positions
AFLP_SxHxC11/4 Marker 10.20 No other positions
AFLP_SxHxC6/7 Marker 9.60 No other positions
AFLP_SxHxC11/15 Marker 8.00 No other positions
AFLP_SxHxC9/15 Marker 6.90 No other positions
AFLP_SxHxC10/12 Marker 4.30 No other positions
AFLP_SxHxC3/6 Marker 2.90 No other positions
AFLP_SxHxC8/12 Marker 0.00 No other positions
mTcCIR52 Marker 65.20 Cocoa - consensus_disease_res - LG6 mTcCIR52 Marker 55.00 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR52 Marker 55.00 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR52 Marker 55.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR52 Marker 56.20 (cM) Automated name-based View Maps
mTcCIR28 Marker 55.30 Cocoa - consensus_disease_res - LG6 mTcCIR28 Marker 49.30 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR28 Marker 49.30 (cM) Automated name-based View Maps
mTcCIR9 Marker 67.80 Cocoa - IMC78xCatongo - LG6 mTcCIR9 Marker 128.70 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR9 Marker 59.10 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR9 Marker 58.50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR9 Marker 60.20 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR9 Marker 15,005,639.00 - 15,005,955.00 (bp) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR9 Marker 59.10 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR9 Marker 59.10 (cM) Automated name-based View Maps
SHC_P.capsici_MHU-76_lg6 QTL 25.00 - 41.00 No other positions
SHC_P.palmivora_517_lg6 QTL 22.00 - 47.00 No other positions
SHC_P.palmivora_Tri_lg6 QTL 23.00 - 45.00 No other positions