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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Coffee-COFFEE_CoffeaSeqGenomeV1_DH200
(Reference Set)
Min.
Correspondences
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Maps chr5
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Coffee - COFFEE_CoffeaSeqGenomeV1_DH200 [ View Map Set Info ]
Map Name: chr5
Map Start: 0 bp
Map Stop: 29,137,935 bp
Features by Type:
13 Marker
13 Total

Map Features

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Items 1 to 13 of 13.
Coffee - COFFEE_CoffeaSeqGenomeV1_DH200 - chr5
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
Me_ssr129793_a Marker 2,885,840 - 2,886,089 No other positions
Me_ssr123964 Marker 21,513,336 - 21,513,575 No other positions
Mg_ssrR220 Marker 25,807,131 - 25,807,401 No other positions
Me_ssr125933 Marker 26,512,694 - 26,513,130 No other positions
Mg_CMA0075 Marker 26,736,618 - 26,736,765 No other positions
Me_ssr119559 Marker 27,970,438 - 27,970,629 No other positions
Mg_ssrR278 Marker 28,633,566 - 28,633,698 No other positions
Me_ssr129793_b Marker 2,888,306 - 2,888,517 No other positions
Mg_M309 Marker 24,161,198 - 24,161,336 No other positions
Mg_M491 Marker 26,402,032 - 26,402,222 No other positions
Mg_M859 Marker 26,736,617 - 26,736,837 No other positions
Me_ssr120239 Marker 27,549,774 - 27,549,930 No other positions
Mg_M373 Marker 28,291,679 - 28,291,852 No other positions