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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-DR1xCatongo
(Reference Set)
Min.
Correspondences
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Maps LG1
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - DR1xCatongo [ View Map Set Info ]
Map Name: LG1
Map Start: 0 cM
Map Stop: 128.6 cM
Features by Type:
15 Marker
3 QTL
18 Total

Map Features

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Items 1 to 18 of 18.
Cocoa - DR1xCatongo - LG1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
cTcCIR120 Marker 128.6 No other positions
AFLP_DxC27/7 Marker 113.9 No other positions
AFLP_DxC9/22 Marker 108.3 No other positions
AFLP_DxC66/4 Marker 69.2 No other positions
AFLP_DxC58/5 Marker 50.2 No other positions
AFLP_DxC12/30 Marker 36.1 No other positions
AFLP_DxC12/3 Marker 29.5 No other positions
CCG1502 Marker 61.2 Cocoa - consensus_disease_res - LG1 CCG1502 Marker 47 (cM) Automated name-based View Maps
Cocoa - test - LG1 CCG1502 Marker 47 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG1 CCG1502 Marker 76.8 (cM) Automated name-based View Maps
CCG1285 Marker 12.2 Cocoa - test - LG2 CCG1285 Marker 39.9 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG1 CCG1285 Marker 8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 CCG1285 Marker 39.9 (cM) Automated name-based View Maps
Cocoa - test - LG1 CCG1285 Marker 12.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 CCG1285 Marker 12.6 (cM) Automated name-based View Maps
cTcCIR19 Marker 77.3 Cocoa - consensus_disease_res - LG1 cTcCIR19 Marker 55.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 cTcCIR19 Marker 55.8 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR19 Marker 55.8 (cM) Automated name-based View Maps
mTcCIR15 Marker 17.5 Cocoa - S52xCatongo - LG1 mTcCIR15 Marker 15 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG1 mTcCIR15 Marker 14.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR15 Marker 18.7 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG1 mTcCIR15 Marker 5.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR15 Marker 18.7 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR15 Marker 18.7 (cM) Automated name-based View Maps
cTcCIR48 Marker 85.2 Cocoa - SSR_SNP_consensus_map - LG1 cTcCIR48 Marker 58.3 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR48 Marker 61.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 cTcCIR48 Marker 61.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR48 Marker 61.2 (cM) Automated name-based View Maps
cTcCIR215 Marker 91.8 Cocoa - ref_UPA402xUF676 - LG1 cTcCIR215 Marker 67 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR215 Marker 67 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG1 cTcCIR215 Marker 70 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR215 Marker 67 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 cTcCIR215 Marker 25,117,660 - 25,118,140 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 cTcCIR215 Marker 62.4 (cM) Automated name-based View Maps
cTcCIR253 Marker 0 Cocoa - S52xCatongo - LG1 cTcCIR253 Marker 0 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 cTcCIR253 Marker 0 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR253 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR253 Marker 0 (cM) Automated name-based View Maps
gTcCIR127 Marker 21 Cocoa - test - LG1 gTcCIR127 Marker 23.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 gTcCIR127 Marker 23.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 gTcCIR127 Marker 23.5 (cM) Automated name-based View Maps
DxC_BLG_lg1 QTL 36 - 50 No other positions
DxC_BSI_lg1 QTL 61 - 77 No other positions
DxC_PW_lg1 QTL 12 - 30 No other positions