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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-IMC78xCatongo
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG4
Start
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - IMC78xCatongo [ View Map Set Info ]
Map Name: LG4
Map Start: 0 cM
Map Stop: 72.4 cM
Features by Type:
11 Marker
9 QTL
20 Total

Map Features

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Items 1 to 20 of 20.
Cocoa - IMC78xCatongo - LG4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AFLP_IxC13/13 Marker 72.4 No other positions
AFLP_IxC15/10 Marker 49.6 No other positions
AFLP_IxC14/4 Marker 29.8 No other positions
AFLP_IxC56/21 Marker 23.2 No other positions
AFLP_IxC11/17 Marker 16 No other positions
AFLP_IxC15/20 Marker 9.9 No other positions
AFLP_IxC32/10 Marker 0 No other positions
cTcCIR212 Marker 58.3 Cocoa - test - LG4 cTcCIR212 Marker 49.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 cTcCIR212 Marker 49.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 cTcCIR212 Marker 49.6 (cM) Automated name-based View Maps
gTcCIR136 Marker 44.1 Cocoa - test - LG4 gTcCIR136 Marker 43.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 gTcCIR136 Marker 43.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 gTcCIR136 Marker 36.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 gTcCIR136 Marker 17,484,278 - 17,484,823 (bp) Automated name-based View Maps
Cocoa - DR1xCatongo - LG4 gTcCIR136 Marker 50.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 gTcCIR136 Marker 43.1 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG4 gTcCIR136 Marker 53 (cM) Automated name-based View Maps
gTcCIR129 Marker 65.4 Cocoa - DR1xCatongo - LG4 gTcCIR129 Marker 72.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 gTcCIR129 Marker 64.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 gTcCIR129 Marker 58 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG4 gTcCIR129 Marker 87.8 (cM) Automated name-based View Maps
Cocoa - test - LG4 gTcCIR129 Marker 64.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 gTcCIR129 Marker 64.1 (cM) Automated name-based View Maps
mTcCIR12 Marker 37 Cocoa - (Sca6xH)xC1 - LG4 mTcCIR12 Marker 27.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG4 mTcCIR12 Marker 33.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR12 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG4 mTcCIR12 Marker 41.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR12 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR12 Marker 35.9 (cM) Automated name-based View Maps
IxC_BLG_lg4 QTL 50 - 65 No other positions
IxC_BSI_lg4 QTL 58 - 65 No other positions
IxC_WBWa_lg4 QTL 58 - 65 No other positions
IxC_OVN_lg4 QTL 50 - 65 No other positions
IxC_WBWb_lg4 QTL 10 - 30 No other positions
IxC_PW_lg4 QTL 10 - 16 No other positions
IxC_RP_lg4 QTL 10 - 16 No other positions
IxC_CW_lg4 QTL 0 - 16 No other positions
IxC_TC_lg4 QTL 10 - 16 No other positions