CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-ref_UPA402xUF676
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - ref_UPA402xUF676 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 97.80 cM
Features by Type:
59 Marker
5 QTL
64 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 64.       of 3 | Next
Cocoa - ref_UPA402xUF676 - LG1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PTSCA6/D5 Marker 16.00 Cocoa - test - LG1 PTSCA6/D5 Marker 16.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 PTSCA6/D5 Marker 14.60 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 PTSCA6/D5 Marker 3,167,138.00 - 3,167,680.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 PTSCA6/D5 Marker 16.00 (cM) Automated name-based View Maps
cot448 Marker 33.50 Cocoa - test - LG1 cot448 Marker 33.50 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cot448 Marker 33.50 (cM) Automated name-based View Maps
C168 Marker 2.70 Cocoa - test - LG1 C168 Marker 2.70 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 C168 Marker 2.70 (cM) Automated name-based View Maps
C157 Marker 80.00 Cocoa - SSR_SNP_consensus_map - LG1 C157 Marker 76.10 (cM) Automated name-based View Maps
Cocoa - test - LG1 C157 Marker 80.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 C157 Marker 27,985,834.00 - 27,985,913.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 C157 Marker 80.00 (cM) Automated name-based View Maps
C138 Marker 74.90 Cocoa - consensus_disease_res - LG1 C138 Marker 74.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 C138 Marker 27,200,966.00 - 27,201,006.00 (bp) Automated name-based View Maps
Cocoa - test - LG1 C138 Marker 74.90 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 C138 Marker 72.00 (cM) Automated name-based View Maps
cTcCIR72 Marker 92.20 Cocoa - test - LG1 cTcCIR72 Marker 92.20 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR72 Marker 92.20 (cM) Automated name-based View Maps
rTcCIR132 Marker 78.70 Cocoa - consensus_disease_res - LG1 rTcCIR132 Marker 78.70 (cM) Automated name-based View Maps
Cocoa - test - LG1 rTcCIR132 Marker 78.70 (cM) Automated name-based View Maps
cTcCIR218 Marker 65.10 Cocoa - consensus_disease_res - LG1 cTcCIR218 Marker 65.10 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR218 Marker 65.10 (cM) Automated name-based View Maps
gTcCIR144 Marker 63.00 Cocoa - Physical map - Tc01 gTcCIR144 Marker 24,450,188.00 - 24,450,608.00 (bp) Automated name-based View Maps
Cocoa - test - LG1 gTcCIR144 Marker 63.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 gTcCIR144 Marker 60.30 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 gTcCIR144 Marker 63.00 (cM) Automated name-based View Maps
cTcCIR19 Marker 55.80 Cocoa - consensus_disease_res - LG1 cTcCIR19 Marker 55.80 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG1 cTcCIR19 Marker 77.30 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR19 Marker 55.80 (cM) Automated name-based View Maps
cTcCIR78 Marker 40.20 Cocoa - test - LG1 cTcCIR78 Marker 40.20 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG1 cTcCIR78 Marker 41.90 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR78 Marker 40.20 (cM) Automated name-based View Maps
cTcCIR230 Marker 33.70 Cocoa - consensus_disease_res - LG1 cTcCIR230 Marker 33.70 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR230 Marker 33.70 (cM) Automated name-based View Maps
gTcCIR127 Marker 23.50 Cocoa - test - LG1 gTcCIR127 Marker 23.50 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG1 gTcCIR127 Marker 21.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 gTcCIR127 Marker 23.50 (cM) Automated name-based View Maps
cTcCIR77 Marker 22.80 Cocoa - Physical map - Tc01 cTcCIR77 Marker 4,103,297.00 - 4,103,388.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR77 Marker 22.80 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 cTcCIR77 Marker 20.90 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR77 Marker 22.80 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG1 cTcCIR77 Marker 36.60 (cM) Automated name-based View Maps
cTcCIR79 Marker 17.30 Cocoa - SSR_SNP_consensus_map - LG1 cTcCIR79 Marker 15.20 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR79 Marker 17.30 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 cTcCIR79 Marker 3,184,722.00 - 3,184,873.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR79 Marker 17.30 (cM) Automated name-based View Maps
cTcCIR1 Marker 14.00 Cocoa - consensus_disease_res - LG1 cTcCIR1 Marker 14.00 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR1 Marker 14.00 (cM) Automated name-based View Maps
cTcCIR238 Marker 12.30 Cocoa - test - LG1 cTcCIR238 Marker 12.30 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR238 Marker 12.30 (cM) Automated name-based View Maps
gTcCIR115 Marker 5.00 Cocoa - test - LG1 gTcCIR115 Marker 5.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 gTcCIR115 Marker 5.00 (cM) Automated name-based View Maps
gTcCIR104 Marker 3.80 Cocoa - test - LG1 gTcCIR104 Marker 3.80 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 gTcCIR104 Marker 3.80 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 gTcCIR104 Marker 1.10 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 gTcCIR104 Marker 742,120.00 - 742,237.00 (bp) Automated name-based View Maps
cTcCIR253 Marker 0.00 Cocoa - test - LG1 cTcCIR253 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR253 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG1 cTcCIR253 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG1 cTcCIR253 Marker 0.00 (cM) Automated name-based View Maps
gTcCIR120 Marker 97.80 Cocoa - consensus_disease_res - LG1 gTcCIR120 Marker 97.80 (cM) Automated name-based View Maps
Cocoa - test - LG1 gTcCIR120 Marker 97.80 (cM) Automated name-based View Maps
cTcCIR215 Marker 67.00 Cocoa - test - LG1 cTcCIR215 Marker 67.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 cTcCIR215 Marker 62.40 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG1 cTcCIR215 Marker 70.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 cTcCIR215 Marker 25,117,660.00 - 25,118,140.00 (bp) Automated name-based View Maps
Cocoa - DR1xCatongo - LG1 cTcCIR215 Marker 91.80 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR215 Marker 67.00 (cM) Automated name-based View Maps
cTcCIR83 Marker 5.30 Cocoa - test - LG1 cTcCIR83 Marker 5.30 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR83 Marker 5.30 (cM) Automated name-based View Maps
cTcCIR48 Marker 61.20 Cocoa - SSR_SNP_consensus_map - LG1 cTcCIR48 Marker 58.30 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR48 Marker 61.20 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG1 cTcCIR48 Marker 85.20 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR48 Marker 61.20 (cM) Automated name-based View Maps
cTcCIR46 Marker 30.60 Cocoa - SSR_SNP_consensus_map - LG1 cTcCIR46 Marker 27.80 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR46 Marker 30.60 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG1 cTcCIR46 Marker 24.00 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR46 Marker 30.60 (cM) Automated name-based View Maps