CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-ref_UPA402xUF676
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - ref_UPA402xUF676 [ View Map Set Info ]
Map Name: LG7
Map Start: 0.00 cM
Map Stop: 73.10 cM
Features by Type:
30 Marker
3 QTL
33 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 33.       of 2 | Next
Cocoa - ref_UPA402xUF676 - LG7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR93 Marker 0.90 Cocoa - consensus_disease_res - LG7 mTcCIR93 Marker 0.90 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR93 Marker 0.90 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR93 Marker 5.20 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR93 Marker 71,595.00 - 72,023.00 (bp) Automated name-based View Maps
mTcCIR110 Marker 23.40 Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR110 Marker 25.50 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR110 Marker 23.40 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR110 Marker 5,342,394.00 - 5,354,252.00 (bp) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR110 Marker 23.40 (cM) Automated name-based View Maps
mTcCIR113 Marker 5.40 Cocoa - consensus_disease_res - LG7 mTcCIR113 Marker 5.40 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR113 Marker 5.40 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR113 Marker 677,729.00 - 678,000.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR113 Marker 8.90 (cM) Automated name-based View Maps
mTcCIR141 Marker 3.40 Cocoa - Physical map - Tc07 mTcCIR141 Marker 437,226.00 - 437,547.00 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR141 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR141 Marker 3.40 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR141 Marker 8.10 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR141 Marker 3.40 (cM) Automated name-based View Maps
mTcCIR147 Marker 40.60 Cocoa - TSH516 - LG7 mTcCIR147 Marker 36.50 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR147 Marker 7,860,575.00 - 7,860,984.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR147 Marker 40.60 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR147 Marker 40.60 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR147 Marker 41.30 (cM) Automated name-based View Maps
mTcCIR177 Marker 44.30 Cocoa - TSH516 - LG7 mTcCIR177 Marker 38.50 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR177 Marker 10,094,145.00 - 10,094,369.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR177 Marker 45.40 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR177 Marker 44.30 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR177 Marker 44.30 (cM) Automated name-based View Maps
mTcCIR179 Marker 44.60 Cocoa - consensus_disease_res - LG7 mTcCIR179 Marker 44.60 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR179 Marker 44.60 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR179 Marker 44.90 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR179 Marker 39.80 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR179 Marker 9,704,012.00 - 9,704,461.00 (bp) Automated name-based View Maps
mTcCIR181 Marker 25.80 Cocoa - consensus_disease_res - LG7 mTcCIR181 Marker 25.80 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR181 Marker 27.30 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR181 Marker 28.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR181 Marker 5,794,645.00 - 5,795,342.00 (bp) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR181 Marker 25.80 (cM) Automated name-based View Maps
mTcCIR186 Marker 49.60 Cocoa - consensus_disease_res - LG7 mTcCIR186 Marker 49.60 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR186 Marker 42.40 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR186 Marker 49.60 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR186 Marker 50.60 (cM) Automated name-based View Maps
mTcCIR190 Marker 3.80 Cocoa - TSH516 - LG7 mTcCIR190 Marker 0.40 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR190 Marker 3.80 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR190 Marker 8.20 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR190 Marker 3.80 (cM) Automated name-based View Maps
mTcCIR277 Marker 47.50 Cocoa - consensus_disease_res - LG7 mTcCIR277 Marker 47.50 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR277 Marker 47.50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR277 Marker 48.90 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR277 Marker 40.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR277 Marker 11,348,363.00 - 11,348,933.00 (bp) Automated name-based View Maps
mTcCIR7 Marker 25.90 Cocoa - DR1xCatongo - LG7 mTcCIR7 Marker 42.60 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG7 mTcCIR7 Marker 27.90 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR7 Marker 25.90 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR7 Marker 25.90 (cM) Automated name-based View Maps
mTcCIR46 Marker 25.40 Cocoa - Physical map - Tc07 mTcCIR46 Marker 5,794,657.00 - 5,795,333.00 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR46 Marker 28.00 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR46 Marker 25.40 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR46 Marker 26.80 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR46 Marker 25.40 (cM) Automated name-based View Maps
mTcCIR55 Marker 35.50 Cocoa - Physical map - Tc07 mTcCIR55 Marker 6,803,910.00 - 6,804,968.00 (bp) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR55 Marker 35.50 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR55 Marker 35.50 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR55 Marker 34.40 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR55 Marker 36.80 (cM) Automated name-based View Maps
mTcCIR56 Marker 33.00 Cocoa - TSH516 - LG7 mTcCIR56 Marker 32.20 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR56 Marker 34.10 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR56 Marker 33.00 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR56 Marker 33.00 (cM) Automated name-based View Maps
cTcCIR94 Marker 50.30 Cocoa - test - LG7 cTcCIR94 Marker 50.30 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG7 cTcCIR94 Marker 57.20 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG7 cTcCIR94 Marker 66.40 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 cTcCIR94 Marker 50.30 (cM) Automated name-based View Maps
gTcCIR152 Marker 15.10 Cocoa - SSR_SNP_consensus_map - LG7 gTcCIR152 Marker 16.90 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 gTcCIR152 Marker 15.10 (cM) Automated name-based View Maps
Cocoa - test - LG7 gTcCIR152 Marker 15.10 (cM) Automated name-based View Maps
gTcCIR138 Marker 11.60 Cocoa - consensus_disease_res - LG7 gTcCIR138 Marker 11.60 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG7 gTcCIR138 Marker 6.00 (cM) Automated name-based View Maps
Cocoa - test - LG7 gTcCIR138 Marker 11.60 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG7 gTcCIR138 Marker 9.70 (cM) Automated name-based View Maps
gTcCIR155 Marker 12.30 Cocoa - Physical map - Tc07 gTcCIR155 Marker 1,413,429.00 - 1,413,562.00 (bp) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG7 gTcCIR155 Marker 9.70 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 gTcCIR155 Marker 12.30 (cM) Automated name-based View Maps
Cocoa - test - LG7 gTcCIR155 Marker 12.30 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 gTcCIR155 Marker 14.70 (cM) Automated name-based View Maps
N1081 Marker 16.80 No other positions
gTcCIR125 Marker 18.50 Cocoa - consensus_disease_res - LG7 gTcCIR125 Marker 18.50 (cM) Automated name-based View Maps
Cocoa - test - LG7 gTcCIR125 Marker 18.50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 gTcCIR125 Marker 20.10 (cM) Automated name-based View Maps
N1077 Marker 17.90 No other positions
cTcCIR71 Marker 23.20 Cocoa - Physical map - Tc07 cTcCIR71 Marker 5,494,860.00 - 5,494,961.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 cTcCIR71 Marker 23.20 (cM) Automated name-based View Maps
Cocoa - test - LG7 cTcCIR71 Marker 23.20 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 cTcCIR71 Marker 25.20 (cM) Automated name-based View Maps
cTcCIR59 Marker 41.90 Cocoa - test - LG7 cTcCIR59 Marker 41.90 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 cTcCIR59 Marker 41.90 (cM) Automated name-based View Maps
rDNAPTA71 Marker 48.80 Cocoa - consensus_disease_res - LG7 rDNAPTA71 Marker 48.80 (cM) Automated name-based View Maps
Cocoa - test - LG7 rDNAPTA71 Marker 48.80 (cM) Automated name-based View Maps