CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-consensus_disease_res
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - consensus_disease_res [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 97.80 cM
Features by Type:
83 Marker
17 QTL
100 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 100.       of 4 | Next
Cocoa - consensus_disease_res - LG1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR66 Marker 24.20 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR66 Marker 24.20 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR66 Marker 24.20 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR66 Marker 1,489,870.00 - 1,490,280.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR66 Marker 24.80 (cM) Automated name-based View Maps
mTcCIR84 Marker 54.50 Cocoa - test - LG1 mTcCIR84 Marker 54.50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR84 Marker 50.80 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR84 Marker 54.50 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR84 Marker 19,297,274.00 - 19,297,422.00 (bp) Automated name-based View Maps
mTcCIR88 Marker 34.50 Cocoa - test - LG1 mTcCIR88 Marker 34.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR88 Marker 34.50 (cM) Automated name-based View Maps
mTcCIR94 Marker 27.30 Cocoa - Physical map - Tc01 mTcCIR94 Marker 5,406,037.00 - 5,406,472.00 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR94 Marker 27.30 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR94 Marker 27.30 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR94 Marker 26.20 (cM) Automated name-based View Maps
mTcCIR97 Marker 65.90 Cocoa - Physical map - Tc01 mTcCIR97 Marker 24,882,340.00 - 24,883,333.00 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR97 Marker 65.90 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR97 Marker 65.90 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR97 Marker 63.60 (cM) Automated name-based View Maps
mTcCIR102 Marker 37.70 Cocoa - test - LG1 mTcCIR102 Marker 37.70 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR102 Marker 35.50 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR102 Marker 8,939,604.00 - 8,939,836.00 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR102 Marker 37.70 (cM) Automated name-based View Maps
mTcCIR106 Marker 11.70 Cocoa - Physical map - Tc01 mTcCIR106 Marker 2,476,580.00 - 2,477,166.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR106 Marker 9.70 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR106 Marker 11.70 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR106 Marker 11.70 (cM) Automated name-based View Maps
mTcCIR118 Marker 11.80 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR118 Marker 11.80 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR118 Marker 2,433,177.00 - 2,433,718.00 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR118 Marker 11.80 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR118 Marker 9.80 (cM) Automated name-based View Maps
mTcCIR121 Marker 32.50 Cocoa - Physical map - Tc01 mTcCIR121 Marker 8,076,409.00 - 8,076,960.00 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR121 Marker 32.50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR121 Marker 31.40 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR121 Marker 32.50 (cM) Automated name-based View Maps
mTcCIR130 Marker 61.00 Cocoa - test - LG1 mTcCIR130 Marker 61.00 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR130 Marker 61.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR130 Marker 57.70 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR130 Marker 23,131,971.00 - 23,132,455.00 (bp) Automated name-based View Maps
mTcCIR137 Marker 53.20 Cocoa - test - LG1 mTcCIR137 Marker 53.20 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR137 Marker 51.40 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR137 Marker 20,953,785.00 - 20,953,985.00 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR137 Marker 53.20 (cM) Automated name-based View Maps
mTcCIR138 Marker 35.30 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR138 Marker 33.60 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR138 Marker 35.30 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR138 Marker 8,666,130.00 - 8,666,372.00 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR138 Marker 35.30 (cM) Automated name-based View Maps
mTcCIR174 Marker 34.50 Cocoa - test - LG1 mTcCIR174 Marker 34.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR174 Marker 34.50 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR174 Marker 7,907,736.00 - 7,908,253.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR174 Marker 32.90 (cM) Automated name-based View Maps
mTcCIR184 Marker 4.70 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR184 Marker 4.70 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR184 Marker 876,927.00 - 877,408.00 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR184 Marker 4.70 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR184 Marker 2.00 (cM) Automated name-based View Maps
mTcCIR194 Marker 95.40 Cocoa - test - LG1 mTcCIR194 Marker 95.40 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR194 Marker 30,900,743.00 - 30,901,001.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR194 Marker 90.90 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR194 Marker 95.40 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR194 Marker 52.60 (cM) Automated name-based View Maps
mTcCIR203 Marker 52.60 Cocoa - test - LG1 mTcCIR203 Marker 52.60 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR203 Marker 51.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR203 Marker 52.60 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR203 Marker 11,743,488.00 - 12,660,767.00 (bp) Automated name-based View Maps
mTcCIR210 Marker 51.80 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR210 Marker 50.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR210 Marker 51.80 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR210 Marker 19,064,289.00 - 19,064,969.00 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR210 Marker 51.80 (cM) Automated name-based View Maps
mTcCIR244 Marker 58.50 Cocoa - TSH516 - LG1 mTcCIR244 Marker 15.70 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR244 Marker 58.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR244 Marker 58.50 (cM) Automated name-based View Maps
mTcCIR246 Marker 60.50 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR246 Marker 60.50 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR246 Marker 23,367,998.00 - 23,368,193.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR246 Marker 57.40 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR246 Marker 60.50 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR246 Marker 17.90 (cM) Automated name-based View Maps
mTcCIR249 Marker 49.10 Cocoa - test - LG1 mTcCIR249 Marker 49.10 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR249 Marker 8.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR249 Marker 49.10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR249 Marker 46.00 (cM) Automated name-based View Maps
mTcCIR262 Marker 31.10 Cocoa - test - LG1 mTcCIR262 Marker 31.10 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR262 Marker 8,145,674.00 - 8,146,245.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR262 Marker 30.40 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR262 Marker 31.10 (cM) Automated name-based View Maps
mTcCIR264 Marker 89.00 Cocoa - test - LG1 mTcCIR264 Marker 89.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR264 Marker 29,843,054.00 - 29,843,553.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR264 Marker 84.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR264 Marker 89.00 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR264 Marker 45.90 (cM) Automated name-based View Maps
mTcCIR270 Marker 36.90 Cocoa - Physical map - Tc01 mTcCIR270 Marker 8,870,787.00 - 8,871,904.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR270 Marker 34.70 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR270 Marker 36.90 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR270 Marker 36.90 (cM) Automated name-based View Maps
mTcCIR272 Marker 36.90 Cocoa - test - LG1 mTcCIR272 Marker 36.90 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR272 Marker 36.90 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR272 Marker 34.70 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR272 Marker 8,842,807.00 - 8,843,067.00 (bp) Automated name-based View Maps
mTcCIR273 Marker 65.30 Cocoa - test - LG1 mTcCIR273 Marker 65.30 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR273 Marker 24,716,634.00 - 24,716,895.00 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR273 Marker 21.40 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR273 Marker 62.90 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR273 Marker 65.30 (cM) Automated name-based View Maps