CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-consensus_disease_res
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - consensus_disease_res [ View Map Set Info ]
Map Name: LG5
Map Start: 0 cM
Map Stop: 73.3 cM
Features by Type:
88 Marker
14 QTL
102 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 102.       of 5 | Next
Cocoa - consensus_disease_res - LG5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR69 Marker 42.1 Cocoa - Physical map - Tc05 mTcCIR69 Marker 18,808,825 - 18,809,278 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR69 Marker 50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR69 Marker 42.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR69 Marker 41.1 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR69 Marker 42.1 (cM) Automated name-based View Maps
mTcCIR80 Marker 60.3 Cocoa - test - LG5 mTcCIR80 Marker 60.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR80 Marker 60.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR80 Marker 63.6 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR80 Marker 74.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR80 Marker 22,654,748 - 22,655,211 (bp) Automated name-based View Maps
mTcCIR86 Marker 29.3 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR86 Marker 29.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR86 Marker 27.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR86 Marker 10,382,948 - 10,388,570 (bp) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR86 Marker 29.3 (cM) Automated name-based View Maps
mTcCIR87 Marker 54.4 Cocoa - Physical map - Tc05 mTcCIR87 Marker 21,545,319 - 21,546,444 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR87 Marker 57.8 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR87 Marker 54.4 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR87 Marker 68.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR87 Marker 54.4 (cM) Automated name-based View Maps
mTcCIR101 Marker 70.7 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR101 Marker 75.6 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR101 Marker 86.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR101 Marker 25,252,837 - 25,253,480 (bp) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR101 Marker 70.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR101 Marker 70.7 (cM) Automated name-based View Maps
mTcCIR109 Marker 72 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR109 Marker 76.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR109 Marker 25,324,140 - 25,324,751 (bp) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR109 Marker 72 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR109 Marker 86.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR109 Marker 72 (cM) Automated name-based View Maps
mTcCIR119 Marker 8 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR119 Marker 7.2 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR119 Marker 8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR119 Marker 8 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR119 Marker 2.5 (cM) Automated name-based View Maps
mTcCIR127 Marker 69.7 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR127 Marker 69.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR127 Marker 75.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR127 Marker 25,016,286 - 25,016,724 (bp) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR127 Marker 69.7 (cM) Automated name-based View Maps
mTcCIR148 Marker 16.7 Cocoa - TSH516 - LG5 mTcCIR148 Marker 13.9 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR148 Marker 16.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR148 Marker 3,359,278 - 3,359,781 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR148 Marker 16.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR148 Marker 16.1 (cM) Automated name-based View Maps
mTcCIR156 Marker 8 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR156 Marker 7.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR156 Marker 1,912,249 - 1,912,605 (bp) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR156 Marker 8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR156 Marker 8 (cM) Automated name-based View Maps
mTcCIR169 Marker 30.9 Cocoa - Physical map - Tc05 mTcCIR169 Marker 13,665,187 - 13,665,487 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR169 Marker 30.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR169 Marker 29.8 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR169 Marker 31.9 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR169 Marker 30.9 (cM) Automated name-based View Maps
mTcCIR170 Marker 37.9 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR170 Marker 36.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR170 Marker 37.9 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR170 Marker 37.9 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR170 Marker 41.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR170 Marker 17,302,875 - 17,303,192 (bp) Automated name-based View Maps
mTcCIR197 Marker 30.5 Cocoa - test - LG5 mTcCIR197 Marker 30.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR197 Marker 30.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR197 Marker 29.4 (cM) Automated name-based View Maps
mTcCIR216 Marker 53.2 Cocoa - test - LG5 mTcCIR216 Marker 53.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR216 Marker 56.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR216 Marker 21,389,747 - 21,390,177 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR216 Marker 53.2 (cM) Automated name-based View Maps
mTcCIR232 Marker 0.8 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR232 Marker 0.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR232 Marker 1 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR232 Marker 0.8 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR232 Marker 1.3 (cM) Automated name-based View Maps
mTcCIR239 Marker 33.7 Cocoa - test - LG5 mTcCIR239 Marker 33.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR239 Marker 33.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR239 Marker 15,733,928 - 15,734,150 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR239 Marker 32.7 (cM) Automated name-based View Maps
mTcCIR245 Marker 41.5 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR245 Marker 41.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR245 Marker 49.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR245 Marker 40 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR245 Marker 17,411,650 - 17,412,019 (bp) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR245 Marker 41.5 (cM) Automated name-based View Maps
mTcCIR248 Marker 33.5 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR248 Marker 32.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR248 Marker 33.5 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR248 Marker 33.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR248 Marker 15,934,385 - 15,934,626 (bp) Automated name-based View Maps
mTcCIR256 Marker 35.9 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR256 Marker 34.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR256 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR256 Marker 16,983,793 - 16,984,161 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR256 Marker 40.4 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR256 Marker 35.9 (cM) Automated name-based View Maps
mTcCIR257 Marker 7.9 Cocoa - test - LG5 mTcCIR257 Marker 7.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR257 Marker 7.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR257 Marker 1,446,675 - 1,447,015 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR257 Marker 7.1 (cM) Automated name-based View Maps
mTcCIR259 Marker 33.5 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR259 Marker 32.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR259 Marker 33.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR259 Marker 15,305,402 - 15,305,623 (bp) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR259 Marker 33.5 (cM) Automated name-based View Maps
mTcCIR265 Marker 0 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR265 Marker 0 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR265 Marker 0 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR265 Marker 0 (cM) Automated name-based View Maps
mTcCIR267 Marker 17.1 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR267 Marker 16.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR267 Marker 17.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR267 Marker 3,199,559 - 3,199,961 (bp) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR267 Marker 17.1 (cM) Automated name-based View Maps
mTcCIR271 Marker 31.6 Cocoa - Physical map - Tc05 mTcCIR271 Marker 14,613,828 - 14,614,117 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR271 Marker 30.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR271 Marker 31.6 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR271 Marker 31.6 (cM) Automated name-based View Maps
mTcCIR274 Marker 73.3 Cocoa - TSH516 - LG5 mTcCIR274 Marker 86.6 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR274 Marker 73.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR274 Marker 25,436,644 - 25,436,911 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR274 Marker 73.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR274 Marker 78.1 (cM) Automated name-based View Maps