CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-test
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - Test [ View Map Set Info ]
Map Name: LG8
Map Start: 0.00 cM
Map Stop: 67.50 cM
Features by Type:
38 Marker
38 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 38.       of 2 | Next
Cocoa - Test - LG8
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR70 Marker 27.80 Cocoa - ref_UPA402xUF676 - LG8 mTcCIR70 Marker 27.80 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR70 Marker 4,095,057.00 - 4,095,278.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR70 Marker 27.90 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR70 Marker 27.80 (cM) Automated name-based View Maps
mTcCIR75 Marker 4.90 Cocoa - Physical map - Tc08 mTcCIR75 Marker 797,201.00 - 797,698.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR75 Marker 4.90 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR75 Marker 4.30 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR75 Marker 4.90 (cM) Automated name-based View Maps
mTcCIR99 Marker 2.00 Cocoa - Physical map - Tc08 mTcCIR99 Marker 373,748.00 - 374,326.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR99 Marker 2.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR99 Marker 2.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR99 Marker 2.00 (cM) Automated name-based View Maps
mTcCIR103 Marker 56.70 Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR103 Marker 54.70 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR103 Marker 56.70 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR103 Marker 10,444,303.00 - 10,444,885.00 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR103 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR103 Marker 56.70 (cM) Automated name-based View Maps
mTcCIR134 Marker 50.10 Cocoa - TSH516 - LG8 mTcCIR134 Marker 3.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR134 Marker 9,269,521.00 - 9,269,779.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR134 Marker 50.10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR134 Marker 48.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR134 Marker 50.10 (cM) Automated name-based View Maps
mTcCIR163 Marker 10.60 Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR163 Marker 10.30 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR163 Marker 10.60 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR163 Marker 10.60 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR163 Marker 1,231,157.00 - 1,231,508.00 (bp) Automated name-based View Maps
mTcCIR189 Marker 46.90 Cocoa - consensus_disease_res - LG8 mTcCIR189 Marker 46.90 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR189 Marker 5.80 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR189 Marker 46.90 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR189 Marker 46.10 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR189 Marker 8,948,439.00 - 8,948,907.00 (bp) Automated name-based View Maps
mTcCIR200 Marker 30.00 Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR200 Marker 29.70 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR200 Marker 30.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR200 Marker 4,510,432.00 - 4,510,748.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR200 Marker 30.00 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR200 Marker 22.40 (cM) Automated name-based View Maps
mTcCIR211 Marker 22.70 Cocoa - consensus_disease_res - LG8 mTcCIR211 Marker 22.70 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR211 Marker 32.60 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR211 Marker 2,618,157.00 - 2,618,571.00 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR211 Marker 22.70 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR211 Marker 23.60 (cM) Automated name-based View Maps
mTcCIR218 Marker 37.00 Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR218 Marker 37.20 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR218 Marker 37.00 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR218 Marker 37.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR218 Marker 6,143,281.00 - 6,143,699.00 (bp) Automated name-based View Maps
mTcCIR225 Marker 21.10 Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR225 Marker 21.60 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR225 Marker 21.10 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR225 Marker 2,343,118.00 - 2,343,797.00 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR225 Marker 34.50 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR225 Marker 21.10 (cM) Automated name-based View Maps
mTcCIR236 Marker 38.00 Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR236 Marker 37.60 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR236 Marker 6,740,537.00 - 6,741,059.00 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR236 Marker 38.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR236 Marker 38.00 (cM) Automated name-based View Maps
mTcCIR258 Marker 25.90 Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR258 Marker 25.80 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR258 Marker 25.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR258 Marker 3,002,633.00 - 3,002,822.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR258 Marker 25.90 (cM) Automated name-based View Maps
mTcCIR282 Marker 10.00 Cocoa - consensus_disease_res - LG8 mTcCIR282 Marker 10.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR282 Marker 954,209.00 - 954,809.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR282 Marker 9.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR282 Marker 10.00 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR282 Marker 44.90 (cM) Automated name-based View Maps
mTcCIR1 Marker 0.00 Cocoa - ref_UPA402xUF676 - LG8 mTcCIR1 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR1 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR1 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG8 mTcCIR1 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR1 Marker 50.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR1 Marker 195,613.00 - 195,946.00 (bp) Automated name-based View Maps
mTcCIR26 Marker 35.60 Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR26 Marker 35.30 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR26 Marker 35.60 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG8 mTcCIR26 Marker 16.90 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR26 Marker 16.20 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR26 Marker 35.60 (cM) Automated name-based View Maps
mTcCIR45 Marker 54.40 Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR45 Marker 52.30 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR45 Marker 9,922,383.00 - 9,922,993.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR45 Marker 54.40 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR45 Marker 54.40 (cM) Automated name-based View Maps
cTcCIR21 Marker 21.50 Cocoa - ref_UPA402xUF676 - LG8 cTcCIR21 Marker 21.50 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG8 cTcCIR21 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 cTcCIR21 Marker 21.50 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG8 cTcCIR21 Marker 0.00 (cM) Automated name-based View Maps
cTcCIR63 Marker 45.10 Cocoa - consensus_disease_res - LG8 cTcCIR63 Marker 45.10 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG8 cTcCIR63 Marker 80.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 cTcCIR63 Marker 45.10 (cM) Automated name-based View Maps
cTcCIR203 Marker 56.70 Cocoa - ref_UPA402xUF676 - LG8 cTcCIR203 Marker 56.70 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 cTcCIR203 Marker 56.70 (cM) Automated name-based View Maps
gTcCIR114 Marker 26.20 Cocoa - ref_UPA402xUF676 - LG8 gTcCIR114 Marker 26.20 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG8 gTcCIR114 Marker 25.80 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 gTcCIR114 Marker 26.20 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG8 gTcCIR114 Marker 4.00 (cM) Automated name-based View Maps
PGI Marker 12.80 Cocoa - consensus_disease_res - LG8 PGI Marker 12.80 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 PGI Marker 12.80 (cM) Automated name-based View Maps
gTcCIR124 Marker 26.80 Cocoa - consensus_disease_res - LG8 gTcCIR124 Marker 26.80 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG8 gTcCIR124 Marker 3.00 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 gTcCIR124 Marker 26.80 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG8 gTcCIR124 Marker 44.80 (cM) Automated name-based View Maps
gTcCIR111 Marker 26.20 Cocoa - ref_UPA402xUF676 - LG8 gTcCIR111 Marker 26.20 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG8 gTcCIR111 Marker 6.40 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG8 gTcCIR111 Marker 51.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 gTcCIR111 Marker 26.20 (cM) Automated name-based View Maps
cTcCIR201 Marker 43.20 Cocoa - ref_UPA402xUF676 - LG8 cTcCIR201 Marker 43.20 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 cTcCIR201 Marker 43.20 (cM) Automated name-based View Maps