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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-S52xCatongo
(Reference Set)
Min.
Correspondences
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Maps LG5A
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - S52xCatongo [ View Map Set Info ]
Map Name: LG5A
Map Start: 0 cM
Map Stop: 41.8 cM
Features by Type:
5 Marker
2 QTL
7 Total

Map Features

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Items 1 to 7 of 7.
Cocoa - S52xCatongo - LG5A
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR10 Marker 29.5 Cocoa - (Sca6xH)xC1 - LG5 mTcCIR10 Marker 24.6 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR10 Marker 24.4 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG5 mTcCIR10 Marker 21.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR10 Marker 5,936,099 - 5,936,310 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR10 Marker 24.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR10 Marker 24.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR10 Marker 24.4 (cM) Automated name-based View Maps
gTcCIR148 Marker 0 Cocoa - SSR_SNP_consensus_map - LG5 gTcCIR148 Marker 7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 gTcCIR148 Marker 8 (cM) Automated name-based View Maps
Cocoa - test - LG5 gTcCIR148 Marker 8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 gTcCIR148 Marker 8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 gTcCIR148 Marker 1,364,769 - 1,365,257 (bp) Automated name-based View Maps
cTcCIR73 Marker 6 Cocoa - consensus_disease_res - LG5 cTcCIR73 Marker 14.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 cTcCIR73 Marker 14.6 (cM) Automated name-based View Maps
Cocoa - test - LG5 cTcCIR73 Marker 14.6 (cM) Automated name-based View Maps
AFLP_SxC39/1 Marker 17.2 No other positions
AFLP_SxC45/4 Marker 41.8 No other positions
SxC_BSI_lg5A QTL 0 - 17 No other positions
SxC_PW_lg5A QTL 0 - 17 No other positions