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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-TSH516
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG4
Map Start: 0.00 cM
Map Stop: 47.70 cM
Features by Type:
14 Marker
14 Total

Map Features

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Items 1 to 14 of 14.
Cocoa - TSH516 - LG4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR206 Marker 47.70 Cocoa - consensus_disease_res - LG4 mTcCIR206 Marker 24.10 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR206 Marker 24.10 (cM) Automated name-based View Maps
SHRSTc33 Marker 22.30 No other positions
mTcCIR43 Marker 30.80 Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR43 Marker 33.40 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR43 Marker 39.40 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR43 Marker 39.40 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR43 Marker 39.40 (cM) Automated name-based View Maps
mTcCIR33 Marker 13.40 Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR33 Marker 45.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR33 Marker 51.20 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR33 Marker 51.20 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR33 Marker 20,031,179.00 - 20,031,975.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR33 Marker 51.20 (cM) Automated name-based View Maps
mTcCIR32 Marker 25.50 Cocoa - test - LG4 mTcCIR32 Marker 44.60 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR32 Marker 44.60 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR32 Marker 44.60 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR32 Marker 40.90 (cM) Automated name-based View Maps
mTcCIR12 Marker 33.10 Cocoa - DR1xCatongo - LG4 mTcCIR12 Marker 41.10 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR12 Marker 35.90 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR12 Marker 35.90 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG4 mTcCIR12 Marker 37.00 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR12 Marker 35.90 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG4 mTcCIR12 Marker 27.50 (cM) Automated name-based View Maps
mTcCIR242 Marker 0.00 Cocoa - Physical map - Tc04 mTcCIR242 Marker 22,829,060.00 - 22,829,425.00 (bp) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR242 Marker 69.50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR242 Marker 61.60 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR242 Marker 69.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR242 Marker 69.50 (cM) Automated name-based View Maps
mTcCIR241 Marker 3.80 Cocoa - consensus_disease_res - LG4 mTcCIR241 Marker 61.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR241 Marker 61.10 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR241 Marker 61.10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR241 Marker 55.10 (cM) Automated name-based View Maps
mTcCIR237 Marker 13.80 Cocoa - Physical map - Tc04 mTcCIR237 Marker 20,145,024.00 - 20,145,232.00 (bp) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR237 Marker 52.70 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR237 Marker 52.70 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR237 Marker 47.40 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR237 Marker 52.70 (cM) Automated name-based View Maps
mTcCIR234 Marker 1.50 Cocoa - test - LG4 mTcCIR234 Marker 69.50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR234 Marker 62.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR234 Marker 69.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR234 Marker 69.50 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR234 Marker 22,562,188.00 - 22,562,658.00 (bp) Automated name-based View Maps
mTcCIR233 Marker 5.20 Cocoa - Physical map - Tc04 mTcCIR233 Marker 21,565,645.00 - 21,566,242.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR233 Marker 55.20 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR233 Marker 61.60 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR233 Marker 61.60 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR233 Marker 61.60 (cM) Automated name-based View Maps
mTcCIR213 Marker 47.70 Cocoa - Physical map - Tc04 mTcCIR213 Marker 11,679,297.00 - 11,680,231.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR213 Marker 24.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR213 Marker 24.10 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR213 Marker 24.10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR213 Marker 22.30 (cM) Automated name-based View Maps
mTcCIR117 Marker 9.90 Cocoa - Physical map - Tc04 mTcCIR117 Marker 20,971,038.00 - 20,971,337.00 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR117 Marker 57.70 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR117 Marker 51.60 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR117 Marker 57.70 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR117 Marker 57.70 (cM) Automated name-based View Maps
mTcCIR95 Marker 19.50 Cocoa - ref_UPA402xUF676 - LG4 mTcCIR95 Marker 48.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR95 Marker 48.00 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR95 Marker 48.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR95 Marker 43.20 (cM) Automated name-based View Maps