CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-TSH516
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 86.60 cM
Features by Type:
27 Marker
27 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 27.       of 2 | Next
Cocoa - TSH516 - LG5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SHRSTc4 Marker 64.70 No other positions
W1211 Marker 50.00 Cocoa - test - LG5 W1211 Marker 42.10 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 W1211 Marker 42.10 (cM) Automated name-based View Maps
SHRSTc19 Marker 48.60 No other positions
mTcCIR149 Marker 40.40 No other positions
mTcCIR196 Marker 26.80 No other positions
SHRSTc22 Marker 18.60 No other positions
SHRSTc11 Marker 8.00 No other positions
mTcSHRSTc12 Marker 7.80 No other positions
mTcSHRSTc37 Marker 5.60 No other positions
mTcCIR111 Marker 0.30 No other positions
W1210 Marker 0.00 Cocoa - consensus_disease_res - LG5 W1210 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - test - LG5 W1210 Marker 0.00 (cM) Automated name-based View Maps
mTcCIR42 Marker 27.80 Cocoa - test - LG5 mTcCIR42 Marker 28.90 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR42 Marker 28.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR42 Marker 11,919,975.00 - 11,920,770.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR42 Marker 28.90 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR42 Marker 27.80 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG5 mTcCIR42 Marker 25.10 (cM) Automated name-based View Maps
mTcCIR10 Marker 21.90 Cocoa - consensus_disease_res - LG5 mTcCIR10 Marker 24.40 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR10 Marker 24.50 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG5 mTcCIR10 Marker 24.60 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR10 Marker 24.40 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR10 Marker 5,936,099.00 - 5,936,310.00 (bp) Automated name-based View Maps
Cocoa - S52xCatongo - LG5A mTcCIR10 Marker 29.50 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR10 Marker 24.40 (cM) Automated name-based View Maps
mTcCIR123 Marker 26.80 Cocoa - test - LG5 mTcCIR123 Marker 28.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR123 Marker 28.50 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR123 Marker 10,338,759.00 - 10,339,187.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR123 Marker 28.50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR123 Marker 27.20 (cM) Automated name-based View Maps
mTcCIR274 Marker 86.60 Cocoa - Physical map - Tc05 mTcCIR274 Marker 25,436,644.00 - 25,436,911.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR274 Marker 73.30 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR274 Marker 73.30 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR274 Marker 73.30 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR274 Marker 78.10 (cM) Automated name-based View Maps
mTcCIR256 Marker 40.40 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR256 Marker 34.60 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR256 Marker 35.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR256 Marker 16,983,793.00 - 16,984,161.00 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR256 Marker 35.90 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR256 Marker 35.90 (cM) Automated name-based View Maps
mTcCIR245 Marker 49.70 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR245 Marker 40.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR245 Marker 17,411,650.00 - 17,412,019.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR245 Marker 41.50 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR245 Marker 41.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR245 Marker 41.50 (cM) Automated name-based View Maps
mTcCIR232 Marker 1.30 Cocoa - test - LG5 mTcCIR232 Marker 0.80 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR232 Marker 1.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR232 Marker 0.80 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR232 Marker 0.80 (cM) Automated name-based View Maps
mTcCIR170 Marker 41.40 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR170 Marker 37.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR170 Marker 17,302,875.00 - 17,303,192.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR170 Marker 37.90 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR170 Marker 36.30 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR170 Marker 37.90 (cM) Automated name-based View Maps
mTcCIR169 Marker 31.90 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR169 Marker 29.80 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR169 Marker 30.90 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR169 Marker 30.90 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR169 Marker 30.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR169 Marker 13,665,187.00 - 13,665,487.00 (bp) Automated name-based View Maps
mTcCIR148 Marker 13.90 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR148 Marker 16.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR148 Marker 16.70 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR148 Marker 16.70 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR148 Marker 16.70 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR148 Marker 3,359,278.00 - 3,359,781.00 (bp) Automated name-based View Maps
mTcCIR119 Marker 2.50 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR119 Marker 8.00 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR119 Marker 8.00 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR119 Marker 8.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR119 Marker 7.20 (cM) Automated name-based View Maps
mTcCIR109 Marker 86.20 Cocoa - consensus_disease_res - LG5 mTcCIR109 Marker 72.00 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR109 Marker 72.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR109 Marker 25,324,140.00 - 25,324,751.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR109 Marker 76.60 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR109 Marker 72.00 (cM) Automated name-based View Maps
mTcCIR101 Marker 86.20 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR101 Marker 70.70 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR101 Marker 25,252,837.00 - 25,253,480.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR101 Marker 70.70 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR101 Marker 75.60 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR101 Marker 70.70 (cM) Automated name-based View Maps
mTcCIR87 Marker 68.90 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR87 Marker 54.40 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR87 Marker 21,545,319.00 - 21,546,444.00 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR87 Marker 54.40 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR87 Marker 57.80 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR87 Marker 54.40 (cM) Automated name-based View Maps