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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-TSH516
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG3
Map Start: 0 cM
Map Stop: 79.7 cM
Features by Type:
29 Marker
29 Total

Map Features

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Items 26 to 29 of 29.       Previous | of 2
Cocoa - TSH516 - LG3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR131 Marker 9.1 Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR131 Marker 68.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR131 Marker 24,475,823 - 24,476,219 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG3 mTcCIR131 Marker 72.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR131 Marker 72.7 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR131 Marker 72.7 (cM) Automated name-based View Maps
mTcCIR120 Marker 79.7 Cocoa - ref_UPA402xUF676 - LG3 mTcCIR120 Marker 6.3 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR120 Marker 6.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR120 Marker 7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR120 Marker 6.3 (cM) Automated name-based View Maps
mTcCIR81 Marker 0 Cocoa - test - LG3 mTcCIR81 Marker 81.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG3 mTcCIR81 Marker 81.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR81 Marker 81.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR81 Marker 76.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR81 Marker 25,403,469 - 25,403,864 (bp) Automated name-based View Maps
mTcCIR78 Marker 38.4 Cocoa - ref_UPA402xUF676 - LG3 mTcCIR78 Marker 46.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR78 Marker 46.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR78 Marker 19,330,503 - 19,331,047 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR78 Marker 43.6 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR78 Marker 46.2 (cM) Automated name-based View Maps