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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cotton-E3
(Reference Set) 		Cotton-Graimondii_physical
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Maps 5 Gr_Chr09
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Marker Cotton
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - E3 [ View Map Set Info ]
Map Name: 5
Map Start: 0 cM
Map Stop: 207.2 cM
Features by Type:
116 Marker
116 Total

Map Features

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Items 101 to 116 of 116.       Previous | of 5
Cotton - E3 - 5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TMB1418 Marker 32.9 Cotton - T3 - 5 TMB1418 Marker 12.23 (cM) Automated name-based View Maps
Cotton - T3 - 19 TMB1418 Marker 9.97 (cM) Automated name-based View Maps
Cotton - HDC - 19 TMB1418 Marker 174.2 (cM) Automated name-based View Maps
Cotton - HDC - 5 TMB1418 Marker 117.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 TMB1418 Marker Cotton 1,512,676 - 1,513,213 (bp) Automated name-based View Maps
BNL2732 Marker 178.2 No other positions
BNL2865 Marker 29.7 Cotton - HDC - 5 BNL2865 Marker 118.6 (cM) Automated name-based View Maps
Cotton - T3 - 19 BNL2865 Marker 5.97 (cM) Automated name-based View Maps
Cotton - HDC - 19 BNL2865 Marker 177.8 (cM) Automated name-based View Maps
NAU3450 Marker 29.1 Cotton - HDC - 5 CLU4368 Marker 118.9 (cM) Automated name-based View Maps
JESPR050 Marker 177.5 Cotton - T3 - 5 JESPR050 Marker 154.07 (cM) Automated name-based View Maps
Cotton - TH - 5 JESPR050 Marker 169.6 (cM) Automated name-based View Maps
Cotton - T3 - 22 JESPR050 Marker 27.32 (cM) Automated name-based View Maps
Cotton - TH - 22 JESPR050 Marker 34.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 JESPR050 Marker 27.2 (cM) Automated name-based View Maps
Cotton - HDC - 22 JESPR050 Marker 36.7 (cM) Automated name-based View Maps
CM65 Marker 176.8 Cotton - Graimondii_physical - Gr_Chr12 CM65 Marker Cotton 5,767,443 - 5,767,829 (bp) Automated name-based View Maps
Cotton - T3 - 5 CM65 Marker 154.69 (cM) Automated name-based View Maps
Cotton - HDC - 5 CM65 Marker 26.8 (cM) Automated name-based View Maps
NAU1137 Marker 29.1 Cotton - TH - 5 NAU1137 Marker 0.6 (cM) Automated name-based View Maps
Cotton - GVc - 5 NAU1137 Marker 22.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU2715 Marker 116.7 (cM) Automated name-based View Maps
Cotton - CH - 5 NAU1137 Marker 224.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c5 NAU1137 Marker 0.31 (cM) Automated name-based View Maps
CIR185 Marker 176.8 Cotton - Guazuncho2xVH8-RIL - c5 CIR185 Marker 92.05 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 CIR185 Marker Cotton 6,070,567 - 6,070,757 (bp) Automated name-based View Maps
Cotton - T3 - 5 CIR185 Marker 153.79 (cM) Automated name-based View Maps
Cotton - HDC - 5 CIR185 Marker 27.3 (cM) Automated name-based View Maps
Cotton - CH - 5 CIR185 Marker 61.1 (cM) Automated name-based View Maps
Cotton - GVc - 5 CIR185 Marker 113.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c5 CIR185 Marker 290.9 (cM) Automated name-based View Maps
CIR224 Marker 27.8 Cotton - Graimondii_physical - Gr_Chr09 CIR224 Marker Cotton 332,369 - 332,555 (bp) Automated name-based View Maps
Cotton - CH - 19 CIR224 Marker 131.7 (cM) Automated name-based View Maps
Cotton - GVc - 19 CIR224 Marker 13.5 (cM) Automated name-based View Maps
Cotton - T3 - 5 CIR224 Marker 5.54 (cM) Automated name-based View Maps
Cotton - T3 - 19 CIR224 Marker 7.28 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c22 CIR224c Marker 39.49 (cM) Automated name-based View Maps
Cotton - HDC - 5 CIR224 Marker 119.3 (cM) Automated name-based View Maps
Cotton - GVc - 5 CIR224 Marker 22.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 CIR224 Marker 50.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c5 CIR224 Marker 22.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D08 CIR224 Marker 17.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c19 CIR224b Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 22 CIR224 Marker 61.3 (cM) Automated name-based View Maps
Cotton - HDC - 19 CIR224 Marker 176.5 (cM) Automated name-based View Maps
Cotton - T3 - 22 CIR224 Marker 67.69 (cM) Automated name-based View Maps
Cotton - GVc - 22 CIR224 Marker 43.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c5 CIR224a Marker 0 (cM) Automated name-based View Maps
BNL1038 Marker 175.7 Cotton - TH - 5 BNL1038 Marker 167.7 (cM) Automated name-based View Maps
Cotton - HDC - 5 BNL1038 Marker 31.7 (cM) Automated name-based View Maps
NAU4034 Marker 23.8 Cotton - TH - 5 NAU4034 Marker 13.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU4422 Marker 120.3 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU4422 Marker 115.3 (cM) Automated name-based View Maps
NAU2140 Marker 173.7 Cotton - HDC - 5 CLU3832 Marker 64.7 (cM) Automated name-based View Maps
Cotton - T3 - 5 NAU2140 Marker 112.36 (cM) Automated name-based View Maps
Cotton - TH - 5 NAU2140 Marker 131.9 (cM) Automated name-based View Maps
NAU3737 Marker 13.4 Cotton - TH - 5 NAU3737 Marker 19.3 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU3838 Marker 114.7 (cM) Automated name-based View Maps
TMB0478 Marker 0 Cotton - Graimondii_physical - Gr_Chr09 TMB0478 Marker Cotton 3,146,935 - 3,147,355 (bp) Automated name-based View Maps
Cotton - HDC - 5 TMB0478 Marker 126.2 (cM) Automated name-based View Maps
HAU1976 Marker 172.6 Cotton - Graimondii_physical - Gr_Chr09 HAU1976 Marker Cotton 25,112,399 - 25,113,099 (bp) Automated name-based View Maps
Cotton - HDC - 19 HAU1976 Marker 83 (cM) Automated name-based View Maps
Cotton - E3 - 19 HAU1976 Marker 152.2 (cM) Automated name-based View Maps
HAU0506 Marker 171.9 No other positions