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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set) 		Cotton-HDC
Min.
Correspondences
Align Vertically
Stack
Maps A01 13
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: A01
Map Start: 0 cM
Map Stop: 173.4 cM
Features by Type:
107 Marker
11 QTL
118 Total

Map Features

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Items 101 to 118 of 118.       Previous | of 5
Cotton - PK - A01
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
pGH690 Marker 34.5 Cotton - HDC - 13 pGH690 Marker 108.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 pGH690 Marker Cotton 55,605,119 - 55,605,622 (bp) Automated name-based View Maps
pVNC218 Marker 100.9 Cotton - HDC - 13 pVNC218 Marker 58.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 pVNC218 Marker Cotton 8,983,332 - 8,984,515 (bp) Automated name-based View Maps
PXP1_69 Marker 92.8 Cotton - HDC - 13 pXP1_69 Marker 67.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 PXP1_69 Marker Cotton 29,736,274 - 29,737,031 (bp) Automated name-based View Maps
PXP3_25 Marker 98.1 Cotton - Graimondii_physical - Gr_Chr10 PXP3_25 Marker Cotton 52,242,269 - 52,242,855 (bp) Automated name-based View Maps
Cotton - HDC - 13 pXP3_25 Marker 59.6 (cM) Automated name-based View Maps
Unig06G03 Marker 115.7 Cotton - HDC - 18 Unig06G03 Marker 28.3 (cM) Automated name-based View Maps
Cotton - HDC - 13 Unig06G03 Marker 47.9 (cM) Automated name-based View Maps
Cotton - PK - c18 Unig06G03 Marker 143.8 (cM) Automated name-based View Maps
Unig22B01 Marker 32.8 Cotton - HDC - 13 Unig22B01 Marker 109.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 Unig22B01 Marker Cotton 56,282,788 - 56,283,214 (bp) Automated name-based View Maps
Unig22C08 Marker 51.5 Cotton - HDC - 13 Unig22C08 Marker 99.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 Unig22C08 Marker Cotton 47,602,880 - 47,603,518 (bp) Automated name-based View Maps
FSA01.1 QTL 24 - 44 No other positions
W3A01.1 QTL 7.5 - 32.7 No other positions
BWA01.1(BT) QTL 99.8 - 128.9 No other positions
FCA01.1 QTL 7.5 - 24.4 No other positions
FFA01.1 QTL 56.9 - 58.2 No other positions
FLA01.05 QTL 56.9 - 58.4 No other positions
FLA01.1(HVsl2.5) QTL 86.5 - 95 No other positions
OPA01.1(BT) QTL 102.5 - 118.3 No other positions
ELA01.1 QTL 92.8 - 95 No other positions
FCA01.2 QTL 85.8 - 96.3 No other positions
FFA01.2 QTL 84.2 - 93 No other positions