CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-ref_UPA402xUF676
(Reference Set) 		Cocoa-consensus_disease_res
Min.
Correspondences
Align Vertically
Stack
Maps LG2 LG2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - ref_UPA402xUF676 [ View Map Set Info ]
Map Name: LG2
Map Start: 0 cM
Map Stop: 100.9 cM
Features by Type:
55 Marker
3 QTL
58 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 51 to 58 of 58.       Previous | of 3
Cocoa - ref_UPA402xUF676 - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR151 Marker 46.7 Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR151 Marker 52.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR151 Marker 46.7 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR151 Marker 46.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR151 Marker 9,385,485 - 9,385,859 (bp) Automated name-based View Maps
mTcCIR129 Marker 19.7 Cocoa - Physical map - Tc02 mTcCIR129 Marker 4,568,896 - 4,569,242 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR129 Marker 27 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR129 Marker 23.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR129 Marker 19.7 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR129 Marker 19.7 (cM) Automated name-based View Maps
mTcCIR100 Marker 14.8 Cocoa - Physical map - Tc02 mTcCIR100 Marker 3,310,551 - 3,311,072 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR100 Marker 22.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR100 Marker 14.8 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR100 Marker 14.8 (cM) Automated name-based View Maps
mTcCIR73 Marker 94.9 Cocoa - Physical map - Tc02 mTcCIR73 Marker 27,352,085 - 27,352,439 (bp) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR73 Marker 94.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR73 Marker 94.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR73 Marker 96.1 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR73 Marker 99.6 (cM) Automated name-based View Maps
mTcCIR68 Marker 92.8 Cocoa - consensus_disease_res - LG2 mTcCIR68 Marker 92.8 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR68 Marker 92.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR68 Marker 26,854,246 - 26,854,833 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR68 Marker 92.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR68 Marker 94.1 (cM) Automated name-based View Maps
ref_FAT/MS_lg2 QTL 82.8 No other positions
ref_AST_lg2 QTL 50 No other positions
ref_BIT_lg2 QTL 50 No other positions