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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cocoa-SSR_SNP_consensus_map
(Reference Set)
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Maps LG10
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG10
Map Start: 0 cM
Map Stop: 59.5 cM
Features by Type:
63 Marker
63 Total

Map Features

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Items 51 to 63 of 63.       Previous | of 3
Cocoa - SSR_SNP_consensus_map - LG10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TcSNP389 Marker 26.6 Cocoa - Physical map - Tc10 TcSNP389 Marker 3,061,110 - 3,062,813 (bp) Automated name-based View Maps
TcSNP674 Marker 3.6 Cocoa - Physical map - Tc10 TcSNP674 Marker 653,933 - 654,383 (bp) Automated name-based View Maps
mTcCIR552 Marker 38.1 Cocoa - Physical map - Tc10 mTcCIR552 Marker 7,156,525 - 7,158,545 (bp) Automated name-based View Maps
mTcCIR453 Marker 43.2 Cocoa - Physical map - Tc05 mTcCIR453 Marker 11,781,095 - 11,783,111 (bp) Automated name-based View Maps
mTcCIR77 Marker 25.2 Cocoa - Physical map - Tc10 mTcCIR77 Marker 2,687,692 - 2,688,213 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR77 Marker 40.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR77 Marker 40.2 (cM) Automated name-based View Maps
Cocoa - test - LG10 mTcCIR77 Marker 40.2 (cM) Automated name-based View Maps
TcSNP546 Marker 2.9 Cocoa - Physical map - Tc10 TcSNP546 Marker 552,102 - 553,764 (bp) Automated name-based View Maps
mTcCIR538 Marker 37.7 Cocoa - Physical map - Tc10 mTcCIR538 Marker 6,749,564 - 6,751,590 (bp) Automated name-based View Maps
gTcCIR137 Marker 42.5 Cocoa - test - LG10 gTcCIR137 Marker 53.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 gTcCIR137 Marker 53.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 gTcCIR137 Marker 53.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 gTcCIR137 Marker 11,974,241 - 11,974,358 (bp) Automated name-based View Maps
mTcCIR155 Marker 25 Cocoa - consensus_disease_res - LG10 mTcCIR155 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG10 mTcCIR155 Marker 40.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR155 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - test - LG10 mTcCIR155 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 mTcCIR155 Marker 2,777,323 - 2,777,810 (bp) Automated name-based View Maps
TcSNP144 Marker 0 Cocoa - Physical map - Tc10 TcSNP144 Marker 66,942 - 69,347 (bp) Automated name-based View Maps
mTcCIR591 Marker 37.3 Cocoa - Physical map - Tc10 mTcCIR591 Marker 6,955,362 - 6,957,379 (bp) Automated name-based View Maps
mTcCIR475 Marker 41.3 Cocoa - Physical map - Tc10 mTcCIR475 Marker 11,386,712 - 11,388,729 (bp) Automated name-based View Maps
TcSNP992 Marker 24.5 Cocoa - Physical map - Tc10 TcSNP992 Marker 2,675,907 - 2,676,751 (bp) Automated name-based View Maps