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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cocoa-SSR_SNP_consensus_map
(Reference Set)
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Correspondences
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Maps LG9
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG9
Map Start: 0 cM
Map Stop: 100.9 cM
Features by Type:
182 Marker
182 Total

Map Features

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Items 176 to 182 of 182.       Previous | of 8
Cocoa - SSR_SNP_consensus_map - LG9
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TcSNP226 Marker 28.8 Cocoa - Physical map - Tc09 TcSNP226 Marker 5,956,464 - 5,957,270 (bp) Automated name-based View Maps
mTcCIR187 Marker 48.3 Cocoa - Physical map - Tc09 mTcCIR187 Marker 14,873,272 - 14,873,743 (bp) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR187 Marker 49.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR187 Marker 49.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR187 Marker 49.9 (cM) Automated name-based View Maps
TcSNP301 Marker 60.2 Cocoa - Physical map - Tc09 TcSNP301 Marker 21,348,845 - 21,349,474 (bp) Automated name-based View Maps
TcSNP12 Marker 10.5 Cocoa - Physical map - Tc09 TcSNP12 Marker 1,702,082 - 1,704,113 (bp) Automated name-based View Maps
mTcCIR166 Marker 18.6 Cocoa - ref_UPA402xUF676 - LG9 mTcCIR166 Marker 20 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG9 mTcCIR166 Marker 78.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR166 Marker 3,407,637 - 3,408,010 (bp) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR166 Marker 20 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR166 Marker 20 (cM) Automated name-based View Maps
TcSNP63 Marker 83.4 Cocoa - Physical map - Tc09 TcSNP63 Marker 27,170,608 - 27,171,892 (bp) Automated name-based View Maps
mTcCIR529 Marker 41 Cocoa - Physical map - Tc09 mTcCIR529 Marker 10,215,358 - 10,217,374 (bp) Automated name-based View Maps