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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-(Sca6xH)xC1
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - (Sca6xH)xC1 [ View Map Set Info ]
Map Name: LG4
Map Start: 0 cM
Map Stop: 69.9 cM
Features by Type:
21 Marker
21 Total

Map Features

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Items 1 to 21 of 21.
Cocoa - (Sca6xH)xC1 - LG4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AFLP_SxHxC13/8 Marker 69.9 No other positions
AFLP_SxHxC13/13 Marker 66.9 No other positions
AFLP_SxHxC9/11 Marker 50.5 No other positions
AFLP_SxHxC1/3 Marker 37.4 No other positions
AFLP_SxHxC3/5 Marker 35.3 No other positions
AFLP_SxHxC15/10 Marker 33.9 No other positions
AFLP_SxHxC3/11 Marker 30.9 No other positions
AFLP_SxHxC14/4 Marker 22.5 No other positions
CA6 Marker 20.5 Cocoa - test - LG4 CA6 Marker 28.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 CA6 Marker 28.2 (cM) Automated name-based View Maps
AFLP_SxHxC8/13 Marker 18.5 No other positions
AFLP_SxHxC9/13 Marker 14.4 No other positions
AFLP_SxHxC5/2 Marker 13.5 No other positions
AFLP_SxHxC15/14 Marker 12.6 No other positions
AFLP_SxHxC13/17 Marker 10.6 No other positions
AFLP_SxHxC8/2 Marker 10.3 No other positions
AFLP_SxHxC13/2 Marker 9.7 No other positions
AFLP_SxHxC4/13 Marker 9 No other positions
AFLP_SxHxC11/16 Marker 6.7 No other positions
C3 Marker 62.8 Cocoa - SSR_SNP_consensus_map - LG4 C3 Marker 60 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 C3 Marker 66.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 C3 Marker 22,465,078 - 22,465,216 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 C3 Marker 66.8 (cM) Automated name-based View Maps
Cocoa - test - LG4 C3 Marker 66.8 (cM) Automated name-based View Maps
C104 Marker 0 Cocoa - test - LG4 C104 Marker 3.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 C104 Marker 3.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 C104 Marker 3.4 (cM) Automated name-based View Maps
mTcCIR12 Marker 27.5 Cocoa - DR1xCatongo - LG4 mTcCIR12 Marker 41.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR12 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR12 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG4 mTcCIR12 Marker 33.1 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG4 mTcCIR12 Marker 37 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR12 Marker 35.9 (cM) Automated name-based View Maps