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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-CH
(Reference Set)
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Correspondences
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Maps 1
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - CH [ View Map Set Info ]
Map Name: 1
Map Start: 0 cM
Map Stop: 113.1 cM
Features by Type:
12 Marker
12 Total

Map Features

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Items 1 to 12 of 12.
Cotton - CH - 1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BNL2440 Marker 0 Cotton - PK - c1 BNL2440 Marker 9.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 BNL2440 Marker Cotton 61,637,363 - 61,637,761 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL2440 Marker 6.6 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL2440 Marker 32.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c1 BNL2440 Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c15 BNL2440 Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 1 BNL2440 Marker 26.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL2440 Marker 25.4 (cM) Automated name-based View Maps
Cotton - TH - 15 BNL2440 Marker 123.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 BNL2440b Marker 0 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL2440 Marker 6.9 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL2440 Marker 18 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL2440 Marker 7.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c15 BNL2440a Marker 3 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL2440 Marker 16.7 (cM) Automated name-based View Maps
MUCS164 Marker 18 Cotton - HDC - 1 CLU2801 Marker 14.5 (cM) Automated name-based View Maps
Cotton - CH - 15 MUCS164 Marker 11.3 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU2801 Marker 22.4 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU2801 Marker 29.9 (cM) Automated name-based View Maps
Cotton - T3 - 1 MUCS164 Marker 107.52 (cM) Automated name-based View Maps
Cotton - T3 - 15 MUCS164 Marker 115.53 (cM) Automated name-based View Maps
CIR004 Marker 63.4 Cotton - Graimondii_physical - Gr_Chr02 CIR004 Marker Cotton 16,370,598 - 16,370,967 (bp) Automated name-based View Maps
Cotton - HDC - 1 CIR004 Marker 53.4 (cM) Automated name-based View Maps
BNL2921 Marker 73.6 Cotton - PK - c1 BNL2921 Marker 100 (cM) Automated name-based View Maps
Cotton - HDC - 1 BNL2921 Marker 60.4 (cM) Automated name-based View Maps
Cotton - TH - 1 BNL2921 Marker 72.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL2921 Marker 115.3 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL2921 Marker 39 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL2921 Marker 63.24 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 BNL2921 Marker Cotton 27,353,761 - 27,354,213 (bp) Automated name-based View Maps
Cotton - E3 - 1 BNL2921 Marker 39.1 (cM) Automated name-based View Maps
MGHES10 Marker 77.6 Cotton - T3 - 15 MGHES10 Marker 64.22 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c15 MGHES10a Marker 39.66 (cM) Automated name-based View Maps
Cotton - T3 - 1 MGHES10 Marker 62.85 (cM) Automated name-based View Maps
Cotton - GVc - 1 MGHES10 Marker 70.9 (cM) Automated name-based View Maps
Cotton - CH - 15 MGHES10 Marker 95 (cM) Automated name-based View Maps
Cotton - GVc - 15 MGHES10 Marker 69.1 (cM) Automated name-based View Maps
Cotton - E3 - 1 MGHES10 Marker 37.8 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU1355 Marker 80.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 MGHES10b Marker 56.88 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU1355 Marker 61 (cM) Automated name-based View Maps
BNL3778 Marker 80 Cotton - HDC - 1 BNL3778 Marker 65.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 BNL3778 Marker Cotton 13,820,986 - 13,821,466 (bp) Automated name-based View Maps
BNL3085 Marker 80.7 Cotton - HDC - 1 BNL3085 Marker 67.1 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL3085 Marker 86.4 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL3085 Marker 103.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 BNL3085 Marker Cotton 15,884,083 - 15,884,732 (bp) Automated name-based View Maps
CIR049 Marker 81.6 Cotton - E3 - 1 CIR049 Marker 29.3 (cM) Automated name-based View Maps
Cotton - HDC - 1 CIR049 Marker 68.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 CIR049 Marker Cotton 16,247,208 - 16,247,592 (bp) Automated name-based View Maps
BNL3888 Marker 92.1 Cotton - PK - c14 BNL3888 Marker 62.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL3888 Marker 185.5 (cM) Automated name-based View Maps
Cotton - TH - 1 BNL3888 Marker 60.7 (cM) Automated name-based View Maps
Cotton - E3 - 1 BNL3888 Marker 43.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c1 BNL3888 Marker 96.7 (cM) Automated name-based View Maps
Cotton - PK - c1 BNL3888 Marker 131.6 (cM) Automated name-based View Maps
Cotton - HDC - 14 BNL3888 Marker 83.6 (cM) Automated name-based View Maps
Cotton - HDC - 1 BNL3888 Marker 89.3 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL3888 Marker 93.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 BNL3888 Marker 76.29 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL3888 Marker 41.27 (cM) Automated name-based View Maps
BNL1667 Marker 97.4 Cotton - T3 - 15 BNL1667 Marker 41.51 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL1667 Marker 109.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL1667 Marker 137.6 (cM) Automated name-based View Maps
Cotton - PK - c14 BNL1667 Marker 73.4 (cM) Automated name-based View Maps
Cotton - HDC - 14 CLU14 Marker 75.5 (cM) Automated name-based View Maps
Cotton - HDC - 2 CLU14 Marker 64.4 (cM) Automated name-based View Maps
Cotton - PK - c2 BNL1667 Marker 87.7 (cM) Automated name-based View Maps
Cotton - HDC - 17 CLU14 Marker 74.4 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU14 Marker 55.2 (cM) Automated name-based View Maps
Cotton - PK - c2 BNL1667 Marker 85.9 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU14 Marker 94.9 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL1667 Marker 122.4 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL1667 Marker 97.4 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL1667 Marker 34.76 (cM) Automated name-based View Maps
Cotton - TH - 15 BNL1667 Marker 48.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c15 BNL1667 Marker 88.5 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU14 Marker 106.1 (cM) Automated name-based View Maps
NAU1040 Marker 107.3 Cotton - Graimondii_physical - Gr_Chr05 NAU1040 Marker Cotton 64,110,135 - 64,110,804 (bp) Automated name-based View Maps
Cotton - HDC - 1 NAU1040 Marker 101.3 (cM) Automated name-based View Maps
BNL3580 Marker 113.1 Cotton - GVc - 1 BNL3580 Marker 107 (cM) Automated name-based View Maps
Cotton - TH - 1 BNL3580 Marker 49.1 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU42 Marker 105.1 (cM) Automated name-based View Maps
Cotton - E3 - 1 BNL3580 Marker 52.2 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL3580 Marker 23.15 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL3580 Marker 196.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c1 BNL3580 Marker 108.7 (cM) Automated name-based View Maps