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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-CH
(Reference Set)
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Correspondences
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Maps 7
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - CH [ View Map Set Info ]
Map Name: 7
Map Start: 0 cM
Map Stop: 167.5 cM
Features by Type:
15 Marker
15 Total

Map Features

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Items 1 to 15 of 15.
Cotton - CH - 7
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
JESPR237 Marker 0 Cotton - Graimondii_physical - Gr_Chr01 JESPR237 Marker Cotton 25,428,360 - 25,428,714 (bp) Automated name-based View Maps
Cotton - HDC - 16 JESPR237 Marker 56.8 (cM) Automated name-based View Maps
Cotton - HDC - 7 JESPR237 Marker 58.9 (cM) Automated name-based View Maps
Cotton - E3 - 16 JESPR237 Marker 101.8 (cM) Automated name-based View Maps
Cotton - T3 - 16 JESPR237 Marker 74.17 (cM) Automated name-based View Maps
BNL1694 Marker 16 Cotton - T3 - 16 BNL1694 Marker 78.22 (cM) Automated name-based View Maps
Cotton - T3 - 7 BNL1694 Marker 85.88 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c7 BNL1694 Marker 86.8 (cM) Automated name-based View Maps
Cotton - GVc - 7 BNL1694 Marker 36.4 (cM) Automated name-based View Maps
Cotton - TH - 7 BNL1694 Marker 69.3 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL1694 Marker 52.4 (cM) Automated name-based View Maps
Cotton - TH - 16 BNL1694 Marker 75.5 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL1694 Marker 64.5 (cM) Automated name-based View Maps
Cotton - PK - c16 BNL1694 Marker 58.1 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL1694 Marker 67.8 (cM) Automated name-based View Maps
BNL2441 Marker 18.5 Cotton - E3 - 16 BNL2441 Marker 106.3 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL2441 Marker 50.5 (cM) Automated name-based View Maps
Cotton - TH - 16 BNL2441 Marker 76.9 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL2441 Marker 65.3 (cM) Automated name-based View Maps
BNL2766 Marker 22 Cotton - TH - 7 BNL2766 Marker 66.9 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL2766 Marker 66.5 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL2766 Marker 47 (cM) Automated name-based View Maps
Cotton - E3 - 16 BNL2766 Marker 109.7 (cM) Automated name-based View Maps
BNL3602 Marker 23.7 Cotton - E3 - 19 BNL3602 Marker 128.1 (cM) Automated name-based View Maps
Cotton - HDC - 19 BNL3602 Marker 94.2 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL3602 Marker 67.1 (cM) Automated name-based View Maps
Cotton - CH - 19 BNL3602 Marker 102.4 (cM) Automated name-based View Maps
JESPR297 Marker 24.8 Cotton - TH - 16 JESPR297 Marker 86.3 (cM) Automated name-based View Maps
Cotton - HDC - 7 JESPR297 Marker 67.5 (cM) Automated name-based View Maps
Cotton - HDC - 15 JESPR297 Marker 64 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 JESPR297 Marker Cotton 50,137,525 - 50,138,164 (bp) Automated name-based View Maps
Cotton - HDC - 16 JESPR297 Marker 41.5 (cM) Automated name-based View Maps
Cotton - T3 - 15 JESPR297 Marker 81.26 (cM) Automated name-based View Maps
Cotton - E3 - 16 JESPR297 Marker 113.2 (cM) Automated name-based View Maps
BNL1604 Marker 60 Cotton - Guazuncho2xVH8-BC2 - c7 BNL1604 Marker 10.6 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL1604 Marker 60.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c16 BNL1604 Marker 69.6 (cM) Automated name-based View Maps
Cotton - TH - 16 BNL1604 Marker 93.8 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL1604 Marker 35.6 (cM) Automated name-based View Maps
Cotton - T3 - 16 BNL1604 Marker 92.75 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c7 BNL1604 Marker 70.2 (cM) Automated name-based View Maps
Cotton - E3 - 16 BNL1604 Marker 117.9 (cM) Automated name-based View Maps
Cotton - T3 - 7 BNL1604 Marker 93.22 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c16 BNL1604 Marker 11.2 (cM) Automated name-based View Maps
Cotton - TH - 7 BNL1604 Marker 74.4 (cM) Automated name-based View Maps
Cotton - GVc - 16 BNL1604 Marker 35.6 (cM) Automated name-based View Maps
Cotton - GVc - 7 BNL1604 Marker 28.6 (cM) Automated name-based View Maps
NAU1222 Marker 87.1 Cotton - HDC - 7 CLU2705 Marker 71.8 (cM) Automated name-based View Maps
Cotton - TH - 7 NAU1222 Marker 62.2 (cM) Automated name-based View Maps
CIR250 Marker 88.9 Cotton - HDC - 7 CLU89 Marker 89.8 (cM) Automated name-based View Maps
BNL3871 Marker 89.3 Cotton - HDC - 7 BNL3871 Marker 68 (cM) Automated name-based View Maps
Cotton - E3 - 7 BNL3871 Marker 78.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 BNL3871 Marker Cotton 27,421,308 - 27,421,942 (bp) Automated name-based View Maps
BNL1694 Marker 94.7 Cotton - TH - 7 BNL1694 Marker 69.3 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL1694 Marker 52.4 (cM) Automated name-based View Maps
Cotton - TH - 16 BNL1694 Marker 75.5 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL1694 Marker 64.5 (cM) Automated name-based View Maps
Cotton - T3 - 16 BNL1694 Marker 78.22 (cM) Automated name-based View Maps
Cotton - GVc - 7 BNL1694 Marker 36.4 (cM) Automated name-based View Maps
Cotton - T3 - 7 BNL1694 Marker 85.88 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c7 BNL1694 Marker 86.8 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL1694 Marker 67.8 (cM) Automated name-based View Maps
Cotton - PK - c16 BNL1694 Marker 58.1 (cM) Automated name-based View Maps
BNL1597 Marker 137.7 Cotton - HDC - 7 BNL1597 Marker 106.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c7 BNL1597 Marker 45.97 (cM) Automated name-based View Maps
Cotton - E3 - 7 BNL1597 Marker 28.4 (cM) Automated name-based View Maps
Cotton - PK - c7 BNL1597 Marker 169.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c7 BNL1597 Marker 176.2 (cM) Automated name-based View Maps
Cotton - GVc - 7 BNL1597 Marker 79.4 (cM) Automated name-based View Maps
NAU1048 Marker 146.9 Cotton - HDC - 7 CLU3427 Marker 108.8 (cM) Automated name-based View Maps
Cotton - HDC - 7 CLU3427 Marker 109.5 (cM) Automated name-based View Maps
Cotton - T3 - 7 NAU1048 Marker 46.14 (cM) Automated name-based View Maps
Cotton - TH - 7 NAU1048 Marker 42 (cM) Automated name-based View Maps
NAU1048 Marker 149.9 Cotton - HDC - 7 CLU3427 Marker 108.8 (cM) Automated name-based View Maps
Cotton - HDC - 7 CLU3427 Marker 109.5 (cM) Automated name-based View Maps
Cotton - T3 - 7 NAU1048 Marker 46.14 (cM) Automated name-based View Maps
Cotton - TH - 7 NAU1048 Marker 42 (cM) Automated name-based View Maps
NAU1043 Marker 167.5 Cotton - Guazuncho2xVH8-RIL - c7 NAU1043b Marker 56.78 (cM) Automated name-based View Maps
Cotton - GVc - 7 NAU1043 Marker 91 (cM) Automated name-based View Maps
Cotton - HDC - 7 CLU2087 Marker 117.1 (cM) Automated name-based View Maps