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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cocoa-DR1xCatongo
(Reference Set)
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Correspondences
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Maps LG2
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - DR1xCatongo [ View Map Set Info ]
Map Name: LG2
Map Start: 0 cM
Map Stop: 112.2 cM
Features by Type:
13 Marker
1 QTL
14 Total

Map Features

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Items 1 to 14 of 14.
Cocoa - DR1xCatongo - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR3 Marker 15.1 Cocoa - ref_UPA402xUF676 - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG2 mTcCIR3 Marker 0 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR3 Marker 25 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR3 Marker 16.4 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG2 mTcCIR3 Marker 17.6 (cM) Automated name-based View Maps
mTcCIR19 Marker 3.1 Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR19 Marker 14.6 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG2 mTcCIR19 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR19 Marker 5.1 (cM) Automated name-based View Maps
cTcCIR53 Marker 41.3 Cocoa - ref_UPA402xUF676 - LG2 cTcCIR53 Marker 29.2 (cM) Automated name-based View Maps
Cocoa - test - LG2 cTcCIR53 Marker 29.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 cTcCIR53 Marker 29.2 (cM) Automated name-based View Maps
gTcCIR147 Marker 0 Cocoa - Physical map - Tc02 gTcCIR147 Marker 27,542,359 - 27,542,529 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 gTcCIR147 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 gTcCIR147 Marker 0 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 gTcCIR147 Marker 5.4 (cM) Automated name-based View Maps
Cocoa - test - LG2 gTcCIR147 Marker 0 (cM) Automated name-based View Maps
gTcCIR161 Marker 26.8 Cocoa - ref_UPA402xUF676 - LG2 gTcCIR161 Marker 24.5 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG2 gTcCIR161 Marker 22.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 gTcCIR161 Marker 24.5 (cM) Automated name-based View Maps
Cocoa - test - LG2 gTcCIR161 Marker 24.5 (cM) Automated name-based View Maps
cTcCIR43 Marker 46.3 Cocoa - SSR_SNP_consensus_map - LG2 cTcCIR43 Marker 51.2 (cM) Automated name-based View Maps
Cocoa - test - LG2 cTcCIR43 Marker 44.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 cTcCIR43 Marker 44.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 cTcCIR43 Marker 44.5 (cM) Automated name-based View Maps
cTcCIR249 Marker 52.1 Cocoa - test - LG2 cTcCIR249 Marker 46.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 cTcCIR249 Marker 46.2 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG2 cTcCIR249 Marker 28.8 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG2 cTcCIR249 Marker 40.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 cTcCIR249 Marker 46.2 (cM) Automated name-based View Maps
gTcCIR151 Marker 112.2 Cocoa - ref_UPA402xUF676 - LG2 gTcCIR151 Marker 100.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 gTcCIR151 Marker 100.9 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG2 gTcCIR151 Marker 89.8 (cM) Automated name-based View Maps
Cocoa - test - LG2 gTcCIR151 Marker 100.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 gTcCIR151 Marker 27,542,571 - 27,542,982 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 gTcCIR151 Marker 101.1 (cM) Automated name-based View Maps
AFLP_DxC12/8 Marker 10.4 No other positions
AFLP_DxC12/27 Marker 59.8 No other positions
AFLP_DxC50/5 Marker 66.4 No other positions
AFLP_DxC12/11 Marker 85 No other positions
AFLP_DxC32/1 Marker 89 No other positions
DxC_BLG_lg2 QTL 41 - 52 No other positions