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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cotton-E3
(Reference Set)
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Correspondences
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Maps 21
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - E3 [ View Map Set Info ]
Map Name: 21
Map Start: 0 cM
Map Stop: 265.9 cM
Features by Type:
133 Marker
133 Total

Map Features

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Items 1 to 25 of 133.       of 6 | Next
Cotton - E3 - 21
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BNL0197 Marker 232.3 Cotton - HDC - 21 BNL0197 Marker 35.1 (cM) Automated name-based View Maps
NAU4004 Marker 101.3 Cotton - HDC - 21 NAU4004 Marker 126.6 (cM) Automated name-based View Maps
Cotton - TH - 21 NAU4004 Marker 70.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 NAU4004 Marker Cotton 40,161,972 - 40,162,912 (bp) Automated name-based View Maps
MUSS532 Marker 233.8 Cotton - TH - 21 MUSS532 Marker 167.1 (cM) Automated name-based View Maps
Cotton - T3 - 21 MUSS532 Marker 0 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 MUSS532 Marker Cotton 1,639,591 - 1,640,381 (bp) Automated name-based View Maps
Cotton - HDC - 21 MUSS532 Marker 15.5 (cM) Automated name-based View Maps
HAU0684 Marker 103 Cotton - HDC - 21 HAU0684 Marker 126.2 (cM) Automated name-based View Maps
NAU4865 Marker 236.7 Cotton - HDC - 21 CLU4620 Marker 12.6 (cM) Automated name-based View Maps
Cotton - TH - 21 NAU4865 Marker 170.4 (cM) Automated name-based View Maps
NAU6289 Marker 104 Cotton - TH - 21 NAU6289 Marker 71.5 (cM) Automated name-based View Maps
Cotton - HDC - 21 NAU6289 Marker 124.3 (cM) Automated name-based View Maps
NAU2653 Marker 243.9 Cotton - HDC - 21 NAU2653 Marker 8.2 (cM) Automated name-based View Maps
Cotton - TH - 21 NAU2653 Marker 175.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 NAU2653 Marker Cotton 582,078 - 582,733 (bp) Automated name-based View Maps
TMB0628 Marker 105 Cotton - Graimondii_physical - Gr_Chr03 TMB0628 Marker Cotton 14,865,124 - 14,865,818 (bp) Automated name-based View Maps
Cotton - T3 - 21 TMB0628 Marker 92.01 (cM) Automated name-based View Maps
Cotton - T3 - 11 TMB0628 Marker 105.38 (cM) Automated name-based View Maps
Cotton - HDC - 11 TMB0628 Marker 143.3 (cM) Automated name-based View Maps
Cotton - E3 - 11 TMB0628 Marker 89.5 (cM) Automated name-based View Maps
Cotton - HDC - 21 TMB0628 Marker 124.3 (cM) Automated name-based View Maps
HAU1484 Marker 245.2 Cotton - HDC - 21 CLU189 Marker 29 (cM) Automated name-based View Maps
Gh498 Marker 106.4 Cotton - E3 - 23 Gh498 Marker 83.9 (cM) Automated name-based View Maps
Cotton - HDC - 21 Gh498 Marker 125.4 (cM) Automated name-based View Maps
Cotton - E3 - 11 Gh498 Marker 89.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 Gh498 Marker Cotton 38,740,597 - 38,741,314 (bp) Automated name-based View Maps
Cotton - HDC - 23 Gh498 Marker 103.2 (cM) Automated name-based View Maps
Cotton - T3 - 11 Gh498 Marker 101.43 (cM) Automated name-based View Maps
Cotton - HDC - 11 Gh498 Marker 139 (cM) Automated name-based View Maps
NAU3373 Marker 246.5 Cotton - E3 - 11 NAU3373 Marker 239.2 (cM) Automated name-based View Maps
Cotton - HDC - 21 CLU113 Marker 16 (cM) Automated name-based View Maps
Cotton - HDC - 11 CLU113 Marker 6.9 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU113 Marker 79.7 (cM) Automated name-based View Maps
Cotton - HDC - 19 CLU113 Marker 96.3 (cM) Automated name-based View Maps
Cotton - HDC - 21 CLU113 Marker 131.5 (cM) Automated name-based View Maps
Cotton - TH - 21 NAU3373 Marker 69.5 (cM) Automated name-based View Maps
DPL0215 Marker 107.2 Cotton - Graimondii_physical - Gr_Chr07 DPL0215 Marker Cotton 40,361,606 - 40,362,032 (bp) Automated name-based View Maps
Cotton - T3 - 21 DPL0215 Marker 92.08 (cM) Automated name-based View Maps
Cotton - HDC - 21 DPL0215 Marker 124.3 (cM) Automated name-based View Maps
NAU3377 Marker 251.6 Cotton - HDC - 11 NAU3377 Marker 22.2 (cM) Automated name-based View Maps
Cotton - HDC - 21 NAU3377 Marker 9.1 (cM) Automated name-based View Maps
Cotton - TH - 11 NAU3377 Marker 164.9 (cM) Automated name-based View Maps
Cotton - E3 - 11 NAU3377 Marker 233.1 (cM) Automated name-based View Maps
Cotton - TH - 21 NAU3377 Marker 174.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 NAU3377 Marker Cotton 379,994 - 380,755 (bp) Automated name-based View Maps
CIR068 Marker 107.9 Cotton - TH - 21 CIR068 Marker 71.4 (cM) Automated name-based View Maps
Cotton - CH - 21 CIR068 Marker 98.8 (cM) Automated name-based View Maps
Cotton - GVc - 21 CIR068 Marker 73.5 (cM) Automated name-based View Maps
Cotton - HDC - 21 CIR068 Marker 124.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D02 CIR068 Marker 109.5 (cM) Automated name-based View Maps
BNL1655 Marker 265.9 Cotton - HDC - 21 BNL1655 Marker 0 (cM) Automated name-based View Maps
TMB2931 Marker 107.9 Cotton - HDC - 21 TMB2931 Marker 125 (cM) Automated name-based View Maps
Cotton - HDC - 15 TMB2931 Marker 77.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 TMB2931 Marker Cotton 44,080,686 - 44,081,321 (bp) Automated name-based View Maps
Cotton - T3 - 15 TMB2931 Marker 66.73 (cM) Automated name-based View Maps
NAU6146 Marker 107.9 Cotton - HDC - 21 NAU6146 Marker 125 (cM) Automated name-based View Maps
Cotton - TH - 21 NAU6146 Marker 71.2 (cM) Automated name-based View Maps
NAU6224 Marker 108.5 Cotton - HDC - 21 NAU6224 Marker 124.3 (cM) Automated name-based View Maps
Cotton - TH - 21 NAU6224 Marker 71.4 (cM) Automated name-based View Maps
TMB0985 Marker 109.1 Cotton - Graimondii_physical - Gr_Chr05 TMB0985 Marker Cotton 1,180,426 - 1,181,088 (bp) Automated name-based View Maps
Cotton - HDC - 21 TMB0985 Marker 123.9 (cM) Automated name-based View Maps
NAU3792 Marker 109.2 Cotton - HDC - 21 CLU3639 Marker 123.9 (cM) Automated name-based View Maps
Cotton - TH - 21 NAU3792 Marker 73 (cM) Automated name-based View Maps
TMB1061 Marker 109.2 Cotton - HDC - 21 CLU5637 Marker 123.9 (cM) Automated name-based View Maps
MUSB0823 Marker 110.6 Cotton - HDC - 21 MUSB0823 Marker 122 (cM) Automated name-based View Maps
Cotton - T3 - 21 MUSB0823 Marker 89.75 (cM) Automated name-based View Maps
MUSB0849 Marker 114 Cotton - Graimondii_physical - Gr_Chr02 MUSB0849 Marker Cotton 7,730,857 - 7,731,879 (bp) Automated name-based View Maps
Cotton - T3 - 11 MUSB0849 Marker 96.5 (cM) Automated name-based View Maps
Cotton - HDC - 11 MUSB0849 Marker 135.1 (cM) Automated name-based View Maps
Cotton - HDC - 21 MUSB0849 Marker 119.2 (cM) Automated name-based View Maps
Cotton - T3 - 21 MUSB0849 Marker 87.28 (cM) Automated name-based View Maps
NAU2758 Marker 114.7 Cotton - HDC - 21 CLU1420 Marker 119 (cM) Automated name-based View Maps
TMB1222 Marker 115.5 Cotton - T3 - 21 TMB1222 Marker 94.34 (cM) Automated name-based View Maps
Cotton - HDC - 11 CLU5648 Marker 137.8 (cM) Automated name-based View Maps
Cotton - HDC - 21 CLU5648 Marker 126.4 (cM) Automated name-based View Maps