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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-E3
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 25
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - E3 [ View Map Set Info ]
Map Name: 25
Map Start: 0 cM
Map Stop: 154 cM
Features by Type:
95 Marker
95 Total

Map Features

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Items 1 to 25 of 95.       of 4 | Next
Cotton - E3 - 25
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
DPL0519 Marker 84.3 Cotton - Graimondii_physical - Gr_Chr10 DPL0519 Marker Cotton 22,762,676 - 22,763,412 (bp) Automated name-based View Maps
Cotton - HDC - 25 DPL0519 Marker 77.3 (cM) Automated name-based View Maps
Cotton - T3 - 25 DPL0519 Marker 58.88 (cM) Automated name-based View Maps
NAU6398 Marker 84.7 Cotton - HDC - 25 NAU6398 Marker 74.2 (cM) Automated name-based View Maps
Cotton - TH - 25 NAU6398 Marker 48 (cM) Automated name-based View Maps
HAU2467 Marker 85.6 Cotton - E3 - 6 HAU2467 Marker 84.2 (cM) Automated name-based View Maps
Cotton - HDC - 6 CLU1560 Marker 94 (cM) Automated name-based View Maps
Cotton - HDC - 25 CLU1560 Marker 76 (cM) Automated name-based View Maps
HAU1783 Marker 85.9 Cotton - HDC - 26 HAU1783 Marker 51.4 (cM) Automated name-based View Maps
Cotton - HDC - 25 HAU1783 Marker 75.9 (cM) Automated name-based View Maps
Cotton - E3 - 26 HAU1783 Marker 22.8 (cM) Automated name-based View Maps
HAU1774 Marker 86.2 Cotton - Graimondii_physical - Gr_Chr10 HAU1774 Marker Cotton 24,911,264 - 24,912,099 (bp) Automated name-based View Maps
Cotton - HDC - 25 HAU1774 Marker 75.9 (cM) Automated name-based View Maps
NAU2679 Marker 86.6 Cotton - HDC - 25 CLU1335 Marker 74.3 (cM) Automated name-based View Maps
Cotton - E3 - 6 NAU2679 Marker 94.8 (cM) Automated name-based View Maps
Cotton - HDC - 6 CLU1335 Marker 87.4 (cM) Automated name-based View Maps
CIR407 Marker 86.9 Cotton - TH - 25 CIR407 Marker 32.1 (cM) Automated name-based View Maps
Cotton - HDC - 25 CIR407 Marker 73.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c25 CIR407 Marker 38.66 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c25 CIR407 Marker 103.2 (cM) Automated name-based View Maps
Cotton - GVc - 25 CIR407 Marker 80.2 (cM) Automated name-based View Maps
Cotton - CH - 25 CIR407 Marker 79.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 CIR407 Marker Cotton 30,245,666 - 30,245,894 (bp) Automated name-based View Maps
NAU2388 Marker 87.9 Cotton - TH - 25 NAU2388 Marker 48.7 (cM) Automated name-based View Maps
Cotton - HDC - 25 CLU3942 Marker 75.4 (cM) Automated name-based View Maps
BNL3103 Marker 88.2 Cotton - Guazuncho2xVH8-BC1 - c25 BNL3103 Marker 107.4 (cM) Automated name-based View Maps
Cotton - GVc - 25 BNL3103 Marker 83 (cM) Automated name-based View Maps
Cotton - T3 - 25 BNL3103 Marker 52.54 (cM) Automated name-based View Maps
Cotton - CH - 25 BNL3103 Marker 99.7 (cM) Automated name-based View Maps
Cotton - HDC - 25 BNL3103 Marker 70.8 (cM) Automated name-based View Maps
Cotton - TH - 25 BNL3103 Marker 31.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 BNL3103 Marker Cotton 40,569,897 - 40,570,358 (bp) Automated name-based View Maps
CIR150 Marker 88.2 Cotton - HDC - 25 CIR150 Marker 70 (cM) Automated name-based View Maps
Cotton - GVc - 25 CIR150 Marker 84 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 CIR150 Marker Cotton 41,297,544 - 41,297,689 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c25 CIR150 Marker 107.4 (cM) Automated name-based View Maps
Cotton - TH - 25 CIR150 Marker 48.4 (cM) Automated name-based View Maps
HAU1931 Marker 88.2 Cotton - HDC - 25 CLU1274 Marker 75.4 (cM) Automated name-based View Maps
HAU3121 Marker 88.2 Cotton - HDC - 25 CLU1145 Marker 75.4 (cM) Automated name-based View Maps
Cotton - HDC - 25 CLU1274 Marker 75.4 (cM) Automated name-based View Maps
BNL3264 Marker 88.3 Cotton - CH - 25 BNL3264 Marker 89.2 (cM) Automated name-based View Maps
Cotton - TH - 25 BNL3264 Marker 45.6 (cM) Automated name-based View Maps
Cotton - HDC - 25 BNL3264 Marker 72 (cM) Automated name-based View Maps
NAU2963 Marker 88.7 Cotton - HDC - 25 CLU3942 Marker 75.4 (cM) Automated name-based View Maps
Gh371 Marker 89 Cotton - HDC - 25 CLU338 Marker 75 (cM) Automated name-based View Maps
NAU3588 Marker 89.3 Cotton - Graimondii_physical - Gr_Chr10 NAU3588 Marker Cotton 45,118,918 - 45,119,761 (bp) Automated name-based View Maps
Cotton - HDC - 25 NAU3588 Marker 74.7 (cM) Automated name-based View Maps
HAU2625 Marker 90.1 Cotton - HDC - 25 CLU1620 Marker 73.7 (cM) Automated name-based View Maps
NAU6379 Marker 90.7 Cotton - HDC - 25 NAU6379 Marker 73.9 (cM) Automated name-based View Maps
Cotton - TH - 25 NAU6379 Marker 47.7 (cM) Automated name-based View Maps
DPL0377 Marker 92.4 Cotton - T3 - 25 DPL0377 Marker 54.43 (cM) Automated name-based View Maps
Cotton - HDC - 25 DPL0377 Marker 72.7 (cM) Automated name-based View Maps
HAU1936 Marker 93.9 Cotton - E3 - 10 HAU1936 Marker 55.8 (cM) Automated name-based View Maps
Cotton - HDC - 25 HAU1936 Marker 69.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 HAU1936 Marker Cotton 48,165,350 - 48,165,711 (bp) Automated name-based View Maps
Cotton - HDC - 10 HAU1936 Marker 49 (cM) Automated name-based View Maps
BNL0150 Marker 94.2 Cotton - HDC - 25 BNL0150 Marker 68.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 BNL0150 Marker Cotton 53,313,609 - 53,313,864 (bp) Automated name-based View Maps
NAU2565 Marker 96 Cotton - HDC - 25 CLU3942 Marker 75.4 (cM) Automated name-based View Maps
Cotton - TH - 25 NAU2565 Marker 48.6 (cM) Automated name-based View Maps
HAU2064 Marker 97.5 Cotton - HDC - 25 CLU1323 Marker 64.8 (cM) Automated name-based View Maps
NAU3171 Marker 98.1 Cotton - HDC - 25 NAU3171 Marker 82.8 (cM) Automated name-based View Maps
Cotton - TH - 25 NAU3171 Marker 52.8 (cM) Automated name-based View Maps
NAU2397 Marker 99 Cotton - HDC - 25 CLU3953 Marker 63 (cM) Automated name-based View Maps
Cotton - T3 - 25 NAU2397 Marker 45.28 (cM) Automated name-based View Maps
Cotton - TH - 25 NAU2397 Marker 53.8 (cM) Automated name-based View Maps