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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cotton-E3
(Reference Set)
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Correspondences
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Maps 26
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - E3 [ View Map Set Info ]
Map Name: 26
Map Start: 0 cM
Map Stop: 123.7 cM
Features by Type:
99 Marker
99 Total

Map Features

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Items 1 to 25 of 99.       of 4 | Next
Cotton - E3 - 26
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
NAU5043 Marker 44.8 Cotton - HDC - 26 CLU1725 Marker 72.1 (cM) Automated name-based View Maps
Cotton - TH - 26 NAU5043 Marker 58.2 (cM) Automated name-based View Maps
HAU2243 Marker 42.1 Cotton - HDC - 26 HAU2243 Marker 72.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 HAU2243 Marker Cotton 39,269,832 - 39,271,380 (bp) Automated name-based View Maps
HAU1292 Marker 42 Cotton - HDC - 26 HAU1292 Marker 72.3 (cM) Automated name-based View Maps
MGHES44 Marker 39.4 Cotton - HDC - 26 CLU2076 Marker 69.6 (cM) Automated name-based View Maps
NAU3647 Marker 37.6 Cotton - Graimondii_physical - Gr_Chr08 NAU3647 Marker Cotton 20,154,094 - 20,154,890 (bp) Automated name-based View Maps
Cotton - HDC - 26 NAU3647 Marker 61.8 (cM) Automated name-based View Maps
Cotton - TH - 26 NAU3647 Marker 52.2 (cM) Automated name-based View Maps
NAU3961 Marker 36.4 Cotton - HDC - 26 NAU3961 Marker 74.2 (cM) Automated name-based View Maps
Cotton - TH - 26 NAU3961 Marker 59.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 NAU3961 Marker Cotton 38,383,742 - 38,384,541 (bp) Automated name-based View Maps
HAU1452 Marker 35.5 Cotton - HDC - 26 HAU1452 Marker 65.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 HAU1452 Marker Cotton 37,671,970 - 37,672,870 (bp) Automated name-based View Maps
HAU2663 Marker 34.2 Cotton - HDC - 12 CLU1638 Marker 43.1 (cM) Automated name-based View Maps
Cotton - E3 - 12 HAU2663 Marker 65.5 (cM) Automated name-based View Maps
Cotton - HDC - 26 CLU1638 Marker 64.2 (cM) Automated name-based View Maps
NAU3005 Marker 33.4 Cotton - HDC - 26 NAU3005 Marker 63.6 (cM) Automated name-based View Maps
Cotton - TH - 26 NAU3005 Marker 52.8 (cM) Automated name-based View Maps
NAU2857 Marker 32.5 Cotton - HDC - 26 CLU4150 Marker 59 (cM) Automated name-based View Maps
Cotton - TH - 26 NAU2857 Marker 49.1 (cM) Automated name-based View Maps
Cotton - HDC - 26 CLU4150 Marker 54.4 (cM) Automated name-based View Maps
BNL1227 Marker 31.9 Cotton - T3 - 12 BNL1227 Marker 47.39 (cM) Automated name-based View Maps
Cotton - PK - c26 BNL1227 Marker 97.7 (cM) Automated name-based View Maps
Cotton - HDC - 12 BNL1227 Marker 44.7 (cM) Automated name-based View Maps
Cotton - T3 - 26 BNL1227 Marker 32.15 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c12 BNL1227 Marker 112.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c12 BNL1227b Marker 48.99 (cM) Automated name-based View Maps
Cotton - GVc - 12 BNL1227 Marker 93.7 (cM) Automated name-based View Maps
Cotton - HDC - 26 BNL1227 Marker 64.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c12 BNL1227 Marker 89.1 (cM) Automated name-based View Maps
Cotton - GVc - 26 BNL1227 Marker 79.3 (cM) Automated name-based View Maps
Cotton - TH - 26 BNL1227 Marker 60.9 (cM) Automated name-based View Maps
Cotton - CH - 12 BNL1227 Marker 148.6 (cM) Automated name-based View Maps
Cotton - CH - 26 BNL1227 Marker 109.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 BNL1227 Marker Cotton 35,944,336 - 35,944,612 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c26 BNL1227 Marker 47.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c26 BNL1227 Marker 127.6 (cM) Automated name-based View Maps
HAU0677 Marker 31.4 Cotton - HDC - 26 CLU677 Marker 61.2 (cM) Automated name-based View Maps
NAU3007 Marker 30.4 Cotton - HDC - 26 CLU4202 Marker 59.2 (cM) Automated name-based View Maps
BNL0840 Marker 30 Cotton - PK - c26 BNL0840 Marker 117.3 (cM) Automated name-based View Maps
Cotton - HDC - 26 BNL0840 Marker 59.9 (cM) Automated name-based View Maps
Cotton - T3 - 26 BNL0840 Marker 28.37 (cM) Automated name-based View Maps
Cotton - TH - 26 BNL0840 Marker 51.6 (cM) Automated name-based View Maps
Cotton - PK - A03 BNL0840 Marker 75.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 BNL0840 Marker Cotton 15,517,193 - 15,517,526 (bp) Automated name-based View Maps
Cotton - CH - 26 BNL0840 Marker 118.4 (cM) Automated name-based View Maps
DPL0665 Marker 29.8 Cotton - T3 - 26 DPL0665 Marker 28.45 (cM) Automated name-based View Maps
Cotton - HDC - 26 DPL0665 Marker 60 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 DPL0665 Marker Cotton 23,210,845 - 23,211,520 (bp) Automated name-based View Maps
Cotton - E3 - 6 DPL0665 Marker 117.6 (cM) Automated name-based View Maps
DPL0838 Marker 29.7 Cotton - E3 - 5 DPL0838 Marker 69.8 (cM) Automated name-based View Maps
Cotton - HDC - 26 DPL0838 Marker 59.4 (cM) Automated name-based View Maps
Cotton - HDC - 5 DPL0838 Marker 109.6 (cM) Automated name-based View Maps
Cotton - T3 - 5 DPL0838 Marker 40.12 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 DPL0838 Marker Cotton 6,478,203 - 6,478,709 (bp) Automated name-based View Maps
NAU3920 Marker 29.4 Cotton - HDC - 26 CLU2262 Marker 59.1 (cM) Automated name-based View Maps
Cotton - TH - 26 NAU3920 Marker 49.9 (cM) Automated name-based View Maps
NAU3006 Marker 29.4 Cotton - TH - 26 NAU3006 Marker 50.3 (cM) Automated name-based View Maps
Cotton - HDC - 26 CLU4202 Marker 59.2 (cM) Automated name-based View Maps
JESPR092 Marker 29.4 Cotton - T3 - 26 JESPR092 Marker 27.5 (cM) Automated name-based View Maps
Cotton - HDC - 26 JESPR092 Marker 59.1 (cM) Automated name-based View Maps
Cotton - TH - 26 JESPR092 Marker 42.1 (cM) Automated name-based View Maps
Cotton - GVc - 26 JESPR092 Marker 84.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c26 JESPR092 Marker 132.1 (cM) Automated name-based View Maps
HAU2587 Marker 29.4 Cotton - HDC - 26 HAU2587 Marker 59.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 HAU2587 Marker Cotton 13,412,681 - 13,413,482 (bp) Automated name-based View Maps
BNL3510 Marker 29.4 Cotton - CH - 26 BNL3510 Marker 117 (cM) Automated name-based View Maps
Cotton - GVc - 26 BNL3510 Marker 84.2 (cM) Automated name-based View Maps
Cotton - TH - 26 BNL3510 Marker 47.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c26 BNL3510 Marker 132.1 (cM) Automated name-based View Maps
Cotton - T3 - 26 BNL3510 Marker 27.19 (cM) Automated name-based View Maps
Cotton - HDC - 26 BNL3510 Marker 58.8 (cM) Automated name-based View Maps
BNL3435 Marker 29.4 Cotton - HDC - 26 BNL3435 Marker 59.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 BNL3435 Marker Cotton 17,620,803 - 17,621,275 (bp) Automated name-based View Maps
BNL0116 Marker 29.3 Cotton - HDC - 26 BNL0116 Marker 59.1 (cM) Automated name-based View Maps
NAU3189 Marker 29.1 Cotton - HDC - 26 NAU3189 Marker 62.7 (cM) Automated name-based View Maps
Cotton - TH - 14 NAU3189 Marker 77.2 (cM) Automated name-based View Maps
Cotton - HDC - 14 NAU3189 Marker 78.4 (cM) Automated name-based View Maps
Cotton - HDC - 2 NAU3189 Marker 50.5 (cM) Automated name-based View Maps
Cotton - TH - 2 NAU3189 Marker 58 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr04 NAU3189 Marker Cotton 8,487,770 - 8,488,502 (bp) Automated name-based View Maps
Cotton - E3 - 2 NAU3189 Marker 68.9 (cM) Automated name-based View Maps
Cotton - TH - 26 NAU3189 Marker 52.5 (cM) Automated name-based View Maps
NAU5425 Marker 28.8 Cotton - HDC - 26 CLU1475 Marker 58.8 (cM) Automated name-based View Maps