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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-E3
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 5
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - E3 [ View Map Set Info ]
Map Name: 5
Map Start: 0 cM
Map Stop: 207.2 cM
Features by Type:
116 Marker
116 Total

Map Features

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Items 1 to 25 of 116.       of 5 | Next
Cotton - E3 - 5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Gh206 Marker 170.5 No other positions
HAU0042 Marker 169.1 Cotton - T3 - 5 HAU0042 Marker 158.84 (cM) Automated name-based View Maps
Cotton - HDC - 5 HAU0042 Marker 23.4 (cM) Automated name-based View Maps
HAU1384 Marker 168.2 No other positions
CIR253 Marker 167.8 Cotton - T3 - 5 CIR253 Marker 163.98 (cM) Automated name-based View Maps
Cotton - GVc - 22 CIR253 Marker 86.1 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU90 Marker 18.1 (cM) Automated name-based View Maps
Cotton - T3 - 22 CIR253 Marker 19.34 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU90 Marker 20.2 (cM) Automated name-based View Maps
Cotton - TH - 5 CIR253 Marker 174.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c5 CIR253 Marker 98.9 (cM) Automated name-based View Maps
Cotton - GVc - 5 CIR253 Marker 122.1 (cM) Automated name-based View Maps
Cotton - CH - 5 CIR253 Marker 49.6 (cM) Automated name-based View Maps
Cotton - CH - 22 CIR253 Marker 108.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c5 CIR253 Marker 316.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c22 CIR253b Marker 72.76 (cM) Automated name-based View Maps
HAU1385 Marker 165.1 No other positions
HAU1168 Marker 162 Cotton - HDC - 5 HAU1168 Marker 86.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 HAU1168 Marker Cotton 22,862,924 - 22,863,506 (bp) Automated name-based View Maps
HAU2691 Marker 161.9 Cotton - HDC - 5 HAU2691 Marker 86.5 (cM) Automated name-based View Maps
Cotton - E3 - 22 HAU2691 Marker 116 (cM) Automated name-based View Maps
Cotton - HDC - 22 HAU2691 Marker 36.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 HAU2691 Marker Cotton 6,017,529 - 6,018,534 (bp) Automated name-based View Maps
HAU2313 Marker 159.7 Cotton - HDC - 5 HAU2313 Marker 87.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 HAU2313 Marker Cotton 22,016,975 - 22,018,336 (bp) Automated name-based View Maps
HAU0032 Marker 157.1 Cotton - HDC - 5 CLU523 Marker 87.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 HAU0032 Marker Cotton 21,880,026 - 21,881,194 (bp) Automated name-based View Maps
Cotton - HDC - 5 HAU0032 Marker 87.7 (cM) Automated name-based View Maps
HAU1500 Marker 156.9 Cotton - HDC - 5 CLU523 Marker 87.8 (cM) Automated name-based View Maps
BNL2448 Marker 156.1 Cotton - Guazuncho2xVH8-RIL - c19 BNL2448a Marker 43.02 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - D08 BNL2448 Marker 80.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D08 BNL2448 Marker 118.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c5 BNL2448 Marker 60.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 BNL2448 Marker 88 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c5 BNL2448b Marker 37.63 (cM) Automated name-based View Maps
Cotton - GVc - 5 BNL2448 Marker 47.1 (cM) Automated name-based View Maps
Cotton - GVc - 19 BNL2448 Marker 102 (cM) Automated name-based View Maps
Cotton - TH - 5 BNL2448 Marker 108.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c5 BNL2448 Marker 167.7 (cM) Automated name-based View Maps
Cotton - CH - 5 BNL2448 Marker 119.9 (cM) Automated name-based View Maps
Cotton - PK - c5 BNL2448 Marker 129.2 (cM) Automated name-based View Maps
Cotton - HDC - 19 BNL2448 Marker 92.3 (cM) Automated name-based View Maps
Gh083 Marker 154.6 Cotton - T3 - 5 Gh083 Marker 87.83 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 Gh083 Marker Cotton 21,634,222 - 21,634,898 (bp) Automated name-based View Maps
Cotton - HDC - 5 Gh083 Marker 90.5 (cM) Automated name-based View Maps
BNL3992 Marker 153.3 Cotton - Guazuncho2xVH8-BC1 - c5 BNL3992 Marker 167.7 (cM) Automated name-based View Maps
Cotton - T3 - 5 BNL3992 Marker 90.08 (cM) Automated name-based View Maps
Cotton - HDC - 5 BNL3992 Marker 88.7 (cM) Automated name-based View Maps
Cotton - GVc - 5 BNL3992 Marker 47.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 BNL3992 Marker Cotton 21,481,240 - 21,481,867 (bp) Automated name-based View Maps
Cotton - TH - 5 BNL3992 Marker 104.7 (cM) Automated name-based View Maps
Cotton - CH - 5 BNL3992 Marker 123.4 (cM) Automated name-based View Maps
Cotton - PK - c5 BNL3992 Marker 117.3 (cM) Automated name-based View Maps
NAU3001 Marker 152.4 Cotton - TH - 5 NAU3001 Marker 105.1 (cM) Automated name-based View Maps
Cotton - HDC - 5 NAU3001 Marker 90.1 (cM) Automated name-based View Maps
Cotton - E3 - 19 NAU3001 Marker 143.6 (cM) Automated name-based View Maps
NAU5417 Marker 152.3 Cotton - HDC - 5 NAU5417 Marker 89.2 (cM) Automated name-based View Maps
JESPR197 Marker 152 Cotton - TH - 5 JESPR197 Marker 106.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 JESPR197 Marker Cotton 21,438,859 - 21,439,028 (bp) Automated name-based View Maps
Cotton - T3 - 5 JESPR197 Marker 89.47 (cM) Automated name-based View Maps
Cotton - HDC - 5 JESPR197 Marker 89.3 (cM) Automated name-based View Maps
NAU5088 Marker 150.7 Cotton - HDC - 5 CLU1228 Marker 89.5 (cM) Automated name-based View Maps
NAU4057 Marker 148.7 Cotton - TH - 5 NAU4057 Marker 187.4 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU4591 Marker 15.3 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU4591 Marker 28 (cM) Automated name-based View Maps
CIR401 Marker 148.5 Cotton - GVc - 2 CIR401 Marker 39.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c2 CIR401 Marker 32.04 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 CIR401 Marker Cotton 18,230,597 - 18,230,764 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 CIR401 Marker 65.9 (cM) Automated name-based View Maps
Cotton - E3 - 2 CIR401 Marker 73.1 (cM) Automated name-based View Maps
Cotton - CH - 5 CIR401 Marker 125.4 (cM) Automated name-based View Maps
Cotton - HDC - 5 CIR401 Marker 89.8 (cM) Automated name-based View Maps
Cotton - CH - 2 CIR401 Marker 54.4 (cM) Automated name-based View Maps
Cotton - HDC - 2 CIR401 Marker 64.4 (cM) Automated name-based View Maps
NAU3620 Marker 146.6 Cotton - Graimondii_physical - Gr_Chr09 NAU3620 Marker Cotton 20,830,754 - 20,831,610 (bp) Automated name-based View Maps
Cotton - TH - 5 NAU3620 Marker 105.1 (cM) Automated name-based View Maps
Cotton - HDC - 5 NAU3620 Marker 90.1 (cM) Automated name-based View Maps
MUSS219 Marker 146.6 Cotton - TH - 5 MUSS219 Marker 209.9 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU1941 Marker 2.3 (cM) Automated name-based View Maps
Cotton - T3 - 5 MUSS219 Marker 195.84 (cM) Automated name-based View Maps
HAU1496 Marker 142.7 Cotton - HDC - 5 HAU1496 Marker 92.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 HAU1496 Marker Cotton 897,803 - 898,587 (bp) Automated name-based View Maps
MUSS118 Marker 140.7 Cotton - HDC - 5 CLU2759 Marker 93.7 (cM) Automated name-based View Maps
Cotton - T3 - 5 MUSS118 Marker 82.48 (cM) Automated name-based View Maps
NAU0861 Marker 139.1 Cotton - HDC - 5 NAU0861 Marker 96.1 (cM) Automated name-based View Maps
Cotton - TH - 5 NAU0861 Marker 96.1 (cM) Automated name-based View Maps
Cotton - GVc - 5 NAU0861 Marker 37.5 (cM) Automated name-based View Maps
Cotton - T3 - 5 NAU0861 Marker 78.78 (cM) Automated name-based View Maps
NAU3014 Marker 139 Cotton - HDC - 5 CLU3567 Marker 96.2 (cM) Automated name-based View Maps