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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-E3
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 7
Start
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - E3 [ View Map Set Info ]
Map Name: 7
Map Start: 0 cM
Map Stop: 109.5 cM
Features by Type:
60 Marker
60 Total

Map Features

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Items 1 to 25 of 60.       of 3 | Next
Cotton - E3 - 7
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CS057 Marker 78.2 Cotton - HDC - 7 CS057 Marker 68.1 (cM) Automated name-based View Maps
BNL3871 Marker 78.3 Cotton - CH - 7 BNL3871 Marker 89.3 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL3871 Marker 68 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 BNL3871 Marker Cotton 27,421,308 - 27,421,942 (bp) Automated name-based View Maps
NAU2975 Marker 79.5 Cotton - Graimondii_physical - Gr_Chr06 NAU2975 Marker Cotton 43,856,919 - 43,857,447 (bp) Automated name-based View Maps
Cotton - E3 - 13 NAU2975 Marker 114 (cM) Automated name-based View Maps
Cotton - HDC - 7 NAU2975 Marker 67.3 (cM) Automated name-based View Maps
Cotton - HDC - 13 NAU2975 Marker 63.8 (cM) Automated name-based View Maps
TMB0046 Marker 80.8 Cotton - HDC - 7 TMB0046 Marker 66.5 (cM) Automated name-based View Maps
CM66 Marker 81.1 Cotton - HDC - 16 CM66 Marker 48.3 (cM) Automated name-based View Maps
Cotton - HDC - 7 CM66 Marker 66.4 (cM) Automated name-based View Maps
Cotton - T3 - 7 CM66 Marker 87.57 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 CM66 Marker Cotton 30,221,290 - 30,221,512 (bp) Automated name-based View Maps
Cotton - HDC - 7 CM66 Marker 66.3 (cM) Automated name-based View Maps
Cotton - T3 - 16 CM66 Marker 81.85 (cM) Automated name-based View Maps
BNL1026 Marker 82.5 Cotton - HDC - 16 BNL1026 Marker 47 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL1026 Marker 66.9 (cM) Automated name-based View Maps
Cotton - TH - 16 BNL1026 Marker 79.4 (cM) Automated name-based View Maps
Cotton - T3 - 7 BNL1026 Marker 86.92 (cM) Automated name-based View Maps
Cotton - T3 - 16 BNL1026 Marker 82.92 (cM) Automated name-based View Maps
Cotton - TH - 7 BNL1026 Marker 66.4 (cM) Automated name-based View Maps
HAU0033 Marker 84.4 Cotton - HDC - 7 CLU525 Marker 55 (cM) Automated name-based View Maps
Cotton - T3 - 7 HAU0033 Marker 87.31 (cM) Automated name-based View Maps
Cotton - HDC - 7 HAU0033 Marker 66.6 (cM) Automated name-based View Maps
TMB2944 Marker 84.6 Cotton - HDC - 7 TMB2944 Marker 64.2 (cM) Automated name-based View Maps
DPL0652 Marker 85 Cotton - HDC - 7 CLU188 Marker 63.8 (cM) Automated name-based View Maps
Cotton - T3 - 7 DPL0652 Marker 90.01 (cM) Automated name-based View Maps
DPL0403 Marker 85.1 Cotton - T3 - 7 DPL0403 Marker 89.89 (cM) Automated name-based View Maps
Cotton - HDC - 7 DPL0403 Marker 63.9 (cM) Automated name-based View Maps
HAU0597 Marker 85.1 Cotton - HDC - 7 HAU0597 Marker 63.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 HAU0597 Marker Cotton 42,736,566 - 42,738,045 (bp) Automated name-based View Maps
HAU1172 Marker 85.1 Cotton - Graimondii_physical - Gr_Chr01 HAU1172 Marker Cotton 44,874,396 - 44,875,166 (bp) Automated name-based View Maps
Cotton - HDC - 7 HAU1172 Marker 63.9 (cM) Automated name-based View Maps
CIR262 Marker 85.9 Cotton - GVc - 7 CIR262 Marker 29 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 CIR262 Marker Cotton 40,582,795 - 40,582,999 (bp) Automated name-based View Maps
Cotton - HDC - 7 CIR262 Marker 60.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c7 CIR262 Marker 70.2 (cM) Automated name-based View Maps
Gh506 Marker 86.5 Cotton - T3 - 7 Gh506 Marker 84.46 (cM) Automated name-based View Maps
Cotton - HDC - 7 CLU188 Marker 63.8 (cM) Automated name-based View Maps
Gh527 Marker 86.9 Cotton - Graimondii_physical - Gr_Chr08 Gh527 Marker Cotton 2,337,953 - 2,338,374 (bp) Automated name-based View Maps
Cotton - T3 - 3 Gh527 Marker 89.01 (cM) Automated name-based View Maps
Cotton - HDC - 3 Gh527 Marker 103.4 (cM) Automated name-based View Maps
Cotton - HDC - 7 Gh527 Marker 63.3 (cM) Automated name-based View Maps
HAU1882 Marker 88.4 Cotton - HDC - 7 CLU762 Marker 62.8 (cM) Automated name-based View Maps
BNL2733 Marker 89.5 Cotton - T3 - 7 BNL2733 Marker 88.97 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL2733 Marker 64.9 (cM) Automated name-based View Maps
Cotton - TH - 7 BNL2733 Marker 64.3 (cM) Automated name-based View Maps
NAU3180 Marker 91.3 Cotton - Graimondii_physical - Gr_Chr01 NAU3180 Marker Cotton 40,848,930 - 40,849,759 (bp) Automated name-based View Maps
Cotton - TH - 7 NAU3180 Marker 65.1 (cM) Automated name-based View Maps
Cotton - HDC - 16 NAU3180 Marker 44.1 (cM) Automated name-based View Maps
Cotton - HDC - 7 NAU3180 Marker 68.4 (cM) Automated name-based View Maps
Cotton - E3 - 16 NAU3180 Marker 120.8 (cM) Automated name-based View Maps
Cotton - TH - 16 NAU3180 Marker 83 (cM) Automated name-based View Maps
HAU1510 Marker 95 Cotton - HDC - 7 CLU1083 Marker 60.6 (cM) Automated name-based View Maps
MUSB1081 Marker 96.6 Cotton - HDC - 7 MUSB1081 Marker 68.2 (cM) Automated name-based View Maps
Cotton - T3 - 7 MUSB1081 Marker 85.47 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 MUSB1081 Marker Cotton 15,073,022 - 15,074,124 (bp) Automated name-based View Maps
Gh548 Marker 97.4 Cotton - T3 - 7 Gh548 Marker 93.72 (cM) Automated name-based View Maps
Cotton - HDC - 7 Gh548 Marker 59.8 (cM) Automated name-based View Maps
HAU1205 Marker 98.7 Cotton - HDC - 7 CLU525 Marker 55 (cM) Automated name-based View Maps
BNL3308 Marker 103.4 Cotton - HDC - 7 BNL3308 Marker 37.8 (cM) Automated name-based View Maps
Cotton - TH - 7 BNL3308 Marker 89.8 (cM) Automated name-based View Maps
NAU5491 Marker 103.8 Cotton - HDC - 7 CLU1460 Marker 35.5 (cM) Automated name-based View Maps
NAU4082 Marker 104.5 Cotton - TH - 7 NAU4082 Marker 91.4 (cM) Automated name-based View Maps
Cotton - HDC - 7 CLU1460 Marker 35.5 (cM) Automated name-based View Maps