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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-E3
(Reference Set)
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Correspondences
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Maps 9
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - E3 [ View Map Set Info ]
Map Name: 9
Map Start: 0 cM
Map Stop: 187 cM
Features by Type:
84 Marker
84 Total

Map Features

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Items 1 to 25 of 84.       of 4 | Next
Cotton - E3 - 9
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
NAU5468 Marker 0 Cotton - Graimondii_physical - Gr_Chr06 NAU5468 Marker Cotton 496,620 - 497,159 (bp) Automated name-based View Maps
Cotton - TH - 9 NAU5468 Marker 1.4 (cM) Automated name-based View Maps
Cotton - HDC - 9 NAU5468 Marker 25.9 (cM) Automated name-based View Maps
DPL0222 Marker 3.4 Cotton - T3 - 9 DPL0222 Marker 137.83 (cM) Automated name-based View Maps
Cotton - HDC - 9 DPL0222 Marker 27.2 (cM) Automated name-based View Maps
HAU2496 Marker 11.8 Cotton - HDC - 23 CLU1576 Marker 41.2 (cM) Automated name-based View Maps
Cotton - E3 - 23 HAU2496 Marker 28.6 (cM) Automated name-based View Maps
Cotton - HDC - 9 CLU1576 Marker 28.1 (cM) Automated name-based View Maps
STV164 Marker 13.6 Cotton - HDC - 9 CLU1576 Marker 28.1 (cM) Automated name-based View Maps
Cotton - HDC - 23 CLU1576 Marker 41.2 (cM) Automated name-based View Maps
Cotton - HDC - 23 CLU4520 Marker 41.4 (cM) Automated name-based View Maps
Cotton - HDC - 9 CLU941 Marker 28.3 (cM) Automated name-based View Maps
Cotton - HDC - 23 CLU941 Marker 40.9 (cM) Automated name-based View Maps
Cotton - HDC - 9 CLU4520 Marker 28.3 (cM) Automated name-based View Maps
Cotton - E3 - 23 STV164 Marker 28.2 (cM) Automated name-based View Maps
NAU3888 Marker 13.8 Cotton - HDC - 23 CLU4520 Marker 41.4 (cM) Automated name-based View Maps
Cotton - TH - 9 NAU3888 Marker 7.7 (cM) Automated name-based View Maps
Cotton - TH - 23 NAU3888 Marker 32.1 (cM) Automated name-based View Maps
Cotton - E3 - 23 NAU3888 Marker 29 (cM) Automated name-based View Maps
Cotton - HDC - 9 CLU4520 Marker 28.3 (cM) Automated name-based View Maps
BNL1670 Marker 14.4 Cotton - HDC - 9 BNL1670 Marker 28.6 (cM) Automated name-based View Maps
Gh486 Marker 17 Cotton - Graimondii_physical - Gr_Chr06 Gh486 Marker Cotton 3,347,497 - 3,348,027 (bp) Automated name-based View Maps
Cotton - T3 - 9 Gh486 Marker 133.13 (cM) Automated name-based View Maps
Cotton - HDC - 9 Gh486 Marker 30.1 (cM) Automated name-based View Maps
TMB0991 Marker 21.1 Cotton - HDC - 9 TMB0991 Marker 32.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 TMB0991 Marker Cotton 5,364,898 - 5,365,534 (bp) Automated name-based View Maps
Gh499 Marker 25.4 Cotton - HDC - 9 CLU234 Marker 35.3 (cM) Automated name-based View Maps
Cotton - T3 - 9 Gh499 Marker 124.62 (cM) Automated name-based View Maps
Cotton - HDC - 9 CLU234 Marker 40.3 (cM) Automated name-based View Maps
Gh539 Marker 30.6 Cotton - Graimondii_physical - Gr_Chr06 Gh539 Marker Cotton 8,895,940 - 8,896,405 (bp) Automated name-based View Maps
Cotton - HDC - 9 Gh539 Marker 37.8 (cM) Automated name-based View Maps
Cotton - T3 - 9 Gh539 Marker 120.65 (cM) Automated name-based View Maps
DPL0679 Marker 32.3 Cotton - Graimondii_physical - Gr_Chr06 DPL0679 Marker Cotton 7,972,353 - 7,973,042 (bp) Automated name-based View Maps
Cotton - HDC - 9 DPL0679 Marker 38 (cM) Automated name-based View Maps
Cotton - T3 - 9 DPL0679 Marker 120.27 (cM) Automated name-based View Maps
DPL0618 Marker 34.9 Cotton - HDC - 9 DPL0618 Marker 38.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 DPL0618 Marker Cotton 14,941,662 - 14,942,394 (bp) Automated name-based View Maps
Cotton - T3 - 9 DPL0618 Marker 120.02 (cM) Automated name-based View Maps
DPL0659 Marker 37.5 Cotton - T3 - 9 DPL0659 Marker 117.81 (cM) Automated name-based View Maps
Cotton - HDC - 9 DPL0659 Marker 39.5 (cM) Automated name-based View Maps
DPL0854 Marker 38.5 Cotton - T3 - 15 DPL0854 Marker 60.6 (cM) Automated name-based View Maps
Cotton - HDC - 15 DPL0854 Marker 81.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 DPL0854 Marker Cotton 9,536,570 - 9,537,332 (bp) Automated name-based View Maps
Cotton - HDC - 9 DPL0854 Marker 39.9 (cM) Automated name-based View Maps
Gh098 Marker 38.8 Cotton - HDC - 9 Gh098 Marker 39.3 (cM) Automated name-based View Maps
Cotton - T3 - 9 Gh098 Marker 118.21 (cM) Automated name-based View Maps
BNL1162 Marker 39.4 Cotton - TH - 9 BNL1162 Marker 31.2 (cM) Automated name-based View Maps
Cotton - CH - 9 BNL1162 Marker 148.8 (cM) Automated name-based View Maps
Cotton - PK - c9 BNL1162 Marker 30.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c9 BNL1162 Marker 31.6 (cM) Automated name-based View Maps
Cotton - T3 - 9 BNL1162 Marker 122.36 (cM) Automated name-based View Maps
Cotton - HDC - 9 BNL1162 Marker 36.7 (cM) Automated name-based View Maps
NAU2575 Marker 41.1 Cotton - E3 - 23 NAU2575 Marker 56.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 NAU2575 Marker Cotton 10,565,299 - 10,566,145 (bp) Automated name-based View Maps
Cotton - HDC - 9 NAU2575 Marker 40.6 (cM) Automated name-based View Maps
Cotton - HDC - 23 NAU2575 Marker 71.1 (cM) Automated name-based View Maps
MUSB0907 Marker 43.5 Cotton - HDC - 9 MUSB0907 Marker 44.2 (cM) Automated name-based View Maps
Cotton - T3 - 9 MUSB0907 Marker 112.66 (cM) Automated name-based View Maps
Gh027 Marker 44.2 Cotton - HDC - 9 Gh027 Marker 38.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 Gh027 Marker Cotton 13,542,117 - 13,542,554 (bp) Automated name-based View Maps
Cotton - T3 - 9 Gh027 Marker 119.34 (cM) Automated name-based View Maps
DPL0550 Marker 44.5 Cotton - Graimondii_physical - Gr_Chr06 DPL0550 Marker Cotton 24,303,164 - 24,303,884 (bp) Automated name-based View Maps
Cotton - HDC - 9 DPL0550 Marker 41.1 (cM) Automated name-based View Maps
Cotton - T3 - 9 DPL0550 Marker 115.33 (cM) Automated name-based View Maps
Gh111 Marker 44.7 Cotton - T3 - 9 Gh111 Marker 116.37 (cM) Automated name-based View Maps
Cotton - HDC - 9 CLU233 Marker 31.9 (cM) Automated name-based View Maps
Cotton - HDC - 9 CLU233 Marker 40.5 (cM) Automated name-based View Maps
Gh112 Marker 45 Cotton - HDC - 9 CLU234 Marker 35.3 (cM) Automated name-based View Maps
Cotton - HDC - 9 CLU234 Marker 40.3 (cM) Automated name-based View Maps
Cotton - T3 - 9 Gh112 Marker 116.61 (cM) Automated name-based View Maps
Gh584 Marker 45.8 Cotton - T3 - 9 Gh584 Marker 130.14 (cM) Automated name-based View Maps
Cotton - HDC - 9 CLU233 Marker 31.9 (cM) Automated name-based View Maps
Cotton - HDC - 9 CLU233 Marker 40.5 (cM) Automated name-based View Maps
HAU2780 Marker 47.2 Cotton - HDC - 9 HAU2780 Marker 42.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 HAU2780 Marker Cotton 21,091,703 - 21,092,907 (bp) Automated name-based View Maps
NAU2739 Marker 48.5 Cotton - TH - 23 NAU2739 Marker 80.7 (cM) Automated name-based View Maps
Cotton - HDC - 23 NAU2739 Marker 91.5 (cM) Automated name-based View Maps
Cotton - E3 - 23 NAU2739 Marker 55.3 (cM) Automated name-based View Maps