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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-IMC78xCatongo
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG2
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - IMC78xCatongo [ View Map Set Info ]
Map Name: LG2
Map Start: 0 cM
Map Stop: 95.9 cM
Features by Type:
11 Marker
3 QTL
14 Total

Map Features

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Items 1 to 14 of 14.
Cocoa - IMC78xCatongo - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AFLP_IxC39/13 Marker 90.3 No other positions
AFLP_IxC32/1 Marker 77.9 No other positions
AFLP_IxC9/19 Marker 63.4 No other positions
AFLP_IxC53/4 Marker 52.1 No other positions
AFLP_IxC39/14 Marker 45.3 No other positions
AFLP_IxC5/9 Marker 29.7 No other positions
AFLP_IxC12/8 Marker 10.2 No other positions
cTcCIR249 Marker 40.2 Cocoa - DR1xCatongo - LG2 cTcCIR249 Marker 52.1 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG2 cTcCIR249 Marker 28.8 (cM) Automated name-based View Maps
Cocoa - test - LG2 cTcCIR249 Marker 46.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 cTcCIR249 Marker 46.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 cTcCIR249 Marker 46.2 (cM) Automated name-based View Maps
gTcCIR161 Marker 22.8 Cocoa - test - LG2 gTcCIR161 Marker 24.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 gTcCIR161 Marker 24.5 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG2 gTcCIR161 Marker 26.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 gTcCIR161 Marker 24.5 (cM) Automated name-based View Maps
mTcCIR19 Marker 0 Cocoa - ref_UPA402xUF676 - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG2 mTcCIR19 Marker 3.1 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR19 Marker 5.1 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR19 Marker 14.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
mTcCIR11 Marker 95.9 Cocoa - S52xCatongo - LG2 mTcCIR11 Marker 82.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR11 Marker 89.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR11 Marker 89.6 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR11 Marker 89.6 (cM) Automated name-based View Maps
IxC_BLG_lg2 QTL 40 - 52 No other positions
IxC_WBWa_lg2 QTL 63 - 78 No other positions
IxC_WBWb_lg2 QTL 0 - 23 No other positions