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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-IMC78xCatongo
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG5
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - IMC78xCatongo [ View Map Set Info ]
Map Name: LG5
Map Start: 0 cM
Map Stop: 145 cM
Features by Type:
10 Marker
4 QTL
14 Total

Map Features

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Items 1 to 14 of 14.
Cocoa - IMC78xCatongo - LG5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AFLP_IxC1/12 Marker 119.9 No other positions
AFLP_IxC1/10 Marker 114 No other positions
AFLP_IxC48/4 Marker 88.7 No other positions
AFLP_IxC15/11 Marker 75 No other positions
AFLP_IxC60/4 Marker 19.9 No other positions
AFLP_IxC60/3 Marker 0 No other positions
cTcCIR56 Marker 100.2 Cocoa - test - LG5 cTcCIR56 Marker 36.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 cTcCIR56 Marker 36.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 cTcCIR56 Marker 36.9 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG5 cTcCIR56 Marker 7.6 (cM) Automated name-based View Maps
gTcCIR106 Marker 63.2 Cocoa - test - LG5 gTcCIR106 Marker 1.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 gTcCIR106 Marker 1.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 gTcCIR106 Marker 1.9 (cM) Automated name-based View Maps
cTcCIR89 Marker 145 Cocoa - test - LG5 cTcCIR89 Marker 70 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG5B cTcCIR89 Marker 18.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 cTcCIR89 Marker 75.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 cTcCIR89 Marker 70 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG5 cTcCIR89 Marker 45.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 cTcCIR89 Marker 70 (cM) Automated name-based View Maps
gTcCIR145 Marker 126.3 Cocoa - test - LG5 gTcCIR145 Marker 56 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 gTcCIR145 Marker 56 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 gTcCIR145 Marker 56 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG5B gTcCIR145 Marker 0 (cM) Automated name-based View Maps
IxC_BLG_lg5 QTL 53 - 75 No other positions
IxC_OVN_lg5 QTL 100 - 119 No other positions
IxC_WBW_lg5 QTL 47 - 89 No other positions
IxC_PN_lg5 QTL 47 - 89 No other positions