CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps D02
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: D02
Map Start: 0 cM
Map Stop: 191.1 cM
Features by Type:
133 Marker
15 QTL
148 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 148.       of 6 | Next
Cotton - PK - D02
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
pGH743 Marker 15.2 Cotton - Graimondii_physical - Gr_Chr07 pGH743 Marker Cotton 53,471,481 - 53,472,266 (bp) Automated name-based View Maps
Cotton - HDC - 21 pGH743 Marker 143.1 (cM) Automated name-based View Maps
A1214 Marker 191.1 Cotton - HDC - 11 A1214 Marker 21.8 (cM) Automated name-based View Maps
Cotton - HDC - 20 A1214 Marker 168.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 A1214 Marker Cotton 121,016 - 121,546 (bp) Automated name-based View Maps
Cotton - PK - c4 A1214 Marker 142.3 (cM) Automated name-based View Maps
Cotton - HDC - 4 A1214 Marker 50.7 (cM) Automated name-based View Maps
Cotton - HDC - 25 A1214 Marker 6.6 (cM) Automated name-based View Maps
Cotton - HDC - 21 A1214 Marker 42 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c25 A1214 Marker 177.7 (cM) Automated name-based View Maps
Cotton - GVc - 20 A1214 Marker 0 (cM) Automated name-based View Maps
Cotton - PK - A03 A1214 Marker 198 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c20 A1214 Marker 0 (cM) Automated name-based View Maps
Cotton - PK - c25 A1214 Marker 159.9 (cM) Automated name-based View Maps
Cotton - GVc - 25 A1214 Marker 148.9 (cM) Automated name-based View Maps
A1174 Marker 90.5 Cotton - HDC - 21 A1174 Marker 114.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 A1174 Marker Cotton 19,327,969 - 19,329,011 (bp) Automated name-based View Maps
pGH436 Marker 134.4 Cotton - HDC - 21 pGH436 Marker 85.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 pGH436 Marker Cotton 8,174,582 - 8,175,257 (bp) Automated name-based View Maps
pAR944 Marker 134.4 Cotton - Graimondii_physical - Gr_Chr07 pAR944 Marker Cotton 8,526,581 - 8,527,097 (bp) Automated name-based View Maps
Cotton - PK - A03 pAR944 Marker 148.5 (cM) Automated name-based View Maps
Cotton - HDC - 21 pAR944 Marker 85.6 (cM) Automated name-based View Maps
Cotton - HDC - 11 pAR944 Marker 68.9 (cM) Automated name-based View Maps
pBAM291 Marker 65.1 Cotton - HDC - 21 pBAM291 Marker 125.8 (cM) Automated name-based View Maps
Cotton - PK - c22 pBAM291 Marker 86.9 (cM) Automated name-based View Maps
Cotton - HDC - 15 pBAM291 Marker 72.5 (cM) Automated name-based View Maps
Cotton - PK - c15 pBAM291 Marker 60.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 pBAM291 Marker Cotton 13,048,225 - 13,049,114 (bp) Automated name-based View Maps
Cotton - HDC - 22 pBAM291 Marker 8.1 (cM) Automated name-based View Maps
pAR708 Marker 139.6 Cotton - Graimondii_physical - Gr_Chr07 pAR708 Marker Cotton 7,176,159 - 7,176,813 (bp) Automated name-based View Maps
Cotton - HDC - 21 pAR708 Marker 83.1 (cM) Automated name-based View Maps
pAR921 Marker 15.2 Cotton - HDC - 21 pAR921 Marker 143.1 (cM) Automated name-based View Maps
pAR570 Marker 167.3 Cotton - PK - A03 pAR570 Marker 179.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D02 pAR570 Marker 234.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 pAR570 Marker Cotton 3,798,804 - 3,799,417 (bp) Automated name-based View Maps
Cotton - GVc - 21 pAR570 Marker 143.8 (cM) Automated name-based View Maps
Cotton - HDC - 11 pAR570 Marker 38.4 (cM) Automated name-based View Maps
Cotton - HDC - 21 pAR570 Marker 69.5 (cM) Automated name-based View Maps
Cotton - GVc - 11 pAR570 Marker 206.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - A03 pAR570 Marker 214.3 (cM) Automated name-based View Maps
pAR636 Marker 128.9 Cotton - HDC - 21 pAR636 Marker 89 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 pAR636 Marker Cotton 9,668,474 - 9,669,539 (bp) Automated name-based View Maps
pAR4_34 Marker 141.8 Cotton - HDC - 11 pAR04_34 Marker 48.4 (cM) Automated name-based View Maps
Cotton - GVc - 11 pAR04_34 Marker 194.4 (cM) Automated name-based View Maps
Cotton - PK - A03 pAR4_34 Marker 160.5 (cM) Automated name-based View Maps
Cotton - HDC - 21 pAR04_34 Marker 82 (cM) Automated name-based View Maps
pAR537 Marker 70.9 Cotton - Graimondii_physical - Gr_Chr07 pAR537 Marker Cotton 28,919,943 - 28,920,248 (bp) Automated name-based View Maps
Cotton - HDC - 21 pAR537 Marker 122.6 (cM) Automated name-based View Maps
pAR286 Marker 0 Cotton - HDC - 21 pAR286 Marker 150.7 (cM) Automated name-based View Maps
pAR178 Marker 98.5 Cotton - HDC - 21 pAR178 Marker 108.7 (cM) Automated name-based View Maps
pAR144 Marker 166.9 Cotton - PK - c9 pAR144 Marker 146.7 (cM) Automated name-based View Maps
Cotton - GVc - 9 pAR144 Marker 17.2 (cM) Automated name-based View Maps
Cotton - HDC - 21 pAR144 Marker 69.7 (cM) Automated name-based View Maps
Cotton - PK - c26 pAR144 Marker 117.2 (cM) Automated name-based View Maps
Cotton - HDC - 26 pAR144 Marker 60 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 pAR144 Marker Cotton 36,335,971 - 36,336,504 (bp) Automated name-based View Maps
Cotton - PK - c10 pAR144 Marker 137.3 (cM) Automated name-based View Maps
Cotton - HDC - 9 pAR144 Marker 128.1 (cM) Automated name-based View Maps
Cotton - HDC - 22 pAR144 Marker 45.6 (cM) Automated name-based View Maps
Cotton - HDC - 10 pAR144 Marker 49.3 (cM) Automated name-based View Maps
Cotton - PK - c22 pAR144 Marker 47.6 (cM) Automated name-based View Maps
Cotton - HDC - 9 pAR144 Marker 23.9 (cM) Automated name-based View Maps
Cotton - PK - c9 pAR144 Marker 33.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c9 pAR144 Marker 64.4 (cM) Automated name-based View Maps
Gate3CH01 Marker 105.3 Cotton - HDC - 7 Gate3CH01 Marker 58.5 (cM) Automated name-based View Maps
Cotton - HDC - 21 Gate3CH01 Marker 103.6 (cM) Automated name-based View Maps
Cotton - PK - c7 Gate3CH01 Marker 112.1 (cM) Automated name-based View Maps
Cotton - HDC - 21 Gate3CH01 Marker 105.4 (cM) Automated name-based View Maps
Gate4AC11 Marker 62.4 Cotton - Graimondii_physical - Gr_Chr09 Gate4AC11 Marker Cotton 2,969,621 - 2,970,388 (bp) Automated name-based View Maps
Cotton - PK - c4 Gate4AC11 Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 4 Gate4AC11 Marker 87.3 (cM) Automated name-based View Maps
Cotton - HDC - 21 Gate4AC11 Marker 126.7 (cM) Automated name-based View Maps
Gate4BF01 Marker 11.7 Cotton - HDC - 21 Gate4BF01 Marker 144.3 (cM) Automated name-based View Maps
Gate4CD11 Marker 5.2 Cotton - HDC - 21 Gate4CD11 Marker 147.7 (cM) Automated name-based View Maps
Gate4DC05 Marker 139.2 Cotton - HDC - 21 Gate4DC05 Marker 83.3 (cM) Automated name-based View Maps
Gate4DF12 Marker 57.9 Cotton - Graimondii_physical - Gr_Chr06 Gate4DF12 Marker Cotton 36,086,964 - 36,087,736 (bp) Automated name-based View Maps
Cotton - HDC - 10 Gate4DF12 Marker 81.9 (cM) Automated name-based View Maps
Cotton - PK - c10 Gate4DF12 Marker 104.6 (cM) Automated name-based View Maps
Cotton - HDC - 21 Gate4DF12 Marker 128.3 (cM) Automated name-based View Maps
pAR10E10 Marker 179.5 Cotton - HDC - 21 CLU5481 Marker 52.4 (cM) Automated name-based View Maps
pAR101 Marker 5.2 Cotton - HDC - 26 pAR101 Marker 143.7 (cM) Automated name-based View Maps
Cotton - PK - c12 pAR101 Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 21 pAR101 Marker 147.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 pAR101 Marker Cotton 56,299,761 - 56,300,341 (bp) Automated name-based View Maps
Cotton - PK - c26 pAR101 Marker 4.9 (cM) Automated name-based View Maps
Cotton - HDC - 12 pAR101 Marker 114.2 (cM) Automated name-based View Maps
pAR099 Marker 51.7 Cotton - HDC - 1 pAR099 Marker 73 (cM) Automated name-based View Maps
Cotton - PK - c15 PAR099 Marker 148.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 pAR099 Marker 158.3 (cM) Automated name-based View Maps
Cotton - GVc - 1 pAR099 Marker 71 (cM) Automated name-based View Maps
Cotton - HDC - 15 pAR099 Marker 194.8 (cM) Automated name-based View Maps
Cotton - HDC - 21 pAR099 Marker 130.4 (cM) Automated name-based View Maps
pAR08C01 Marker 55.8 Cotton - HDC - 21 pAR08C01 Marker 129 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 pAR08C01 Marker Cotton 48,700,804 - 48,701,425 (bp) Automated name-based View Maps