CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps D03
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: D03
Map Start: 0 cM
Map Stop: 183.8 cM
Features by Type:
93 Marker
14 QTL
107 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 107.       of 5 | Next
Cotton - PK - D03
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
A1811 Marker 181.9 Cotton - HDC - 24 A1811 Marker 156.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr04 A1811 Marker Cotton 345,100 - 346,063 (bp) Automated name-based View Maps
BNL3860 Marker 44.5 Cotton - Guazuncho2xVH8-BC2 - D03 BNL3860 Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 24 BNL3860 Marker 50.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D03 BNL3860 Marker 39 (cM) Automated name-based View Maps
Cotton - CH - 24 BNL3860 Marker 43.5 (cM) Automated name-based View Maps
Cotton - TH - 24 BNL3860 Marker 57.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c24 BNL3860 Marker 18.59 (cM) Automated name-based View Maps
Cotton - GVc - 24 BNL3860 Marker 27.3 (cM) Automated name-based View Maps
Coau1M19 Marker 4.8 Cotton - PK - A02 Coau1M19 Marker 6.7 (cM) Automated name-based View Maps
Cotton - HDC - 24 Coau1M19 Marker 19.8 (cM) Automated name-based View Maps
Cotton - HDC - 8 Coau1M19 Marker 13.9 (cM) Automated name-based View Maps
Coau2C15 Marker 127.3 Cotton - PK - D02 Coau2C15 Marker 103.5 (cM) Automated name-based View Maps
Cotton - HDC - 21 Coau2C15 Marker 104.9 (cM) Automated name-based View Maps
Cotton - HDC - 24 Coau2C15 Marker 119.2 (cM) Automated name-based View Maps
Coau2L09 Marker 0 Cotton - PK - A02 Coau2L09 Marker 0 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr04 Coau2L09 Marker Cotton 61,892,422 - 61,893,085 (bp) Automated name-based View Maps
Cotton - HDC - 24 Coau2L09 Marker 16.1 (cM) Automated name-based View Maps
Cotton - HDC - 8 Coau2L09 Marker 8.3 (cM) Automated name-based View Maps
G1013 Marker 120.2 Cotton - HDC - 24 G1013 Marker 110.9 (cM) Automated name-based View Maps
G1276 Marker 180.1 Cotton - GVc - 8 G1276 Marker 181 (cM) Automated name-based View Maps
Cotton - HDC - 24 G1276 Marker 155.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - A02 G1276 Marker 235.2 (cM) Automated name-based View Maps
Cotton - PK - A02 G1276 Marker 177.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr04 G1276 Marker Cotton 126,439 - 127,997 (bp) Automated name-based View Maps
Cotton - GVc - 24 G1276 Marker 124 (cM) Automated name-based View Maps
Cotton - HDC - 8 G1276 Marker 156.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D03 G1276 Marker 171.3 (cM) Automated name-based View Maps
Gate1BG03 Marker 111.4 Cotton - PK - c3 Gate1BG03 Marker 85.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr04 Gate1BG03 Marker Cotton 35,917,852 - 35,918,088 (bp) Automated name-based View Maps
Cotton - HDC - 3 Gate1BG03 Marker 66.5 (cM) Automated name-based View Maps
Cotton - HDC - 24 Gate1BG03 Marker 100.7 (cM) Automated name-based View Maps
Gate1CC03 Marker 121.1 Cotton - HDC - 24 Gate1CC03 Marker 112 (cM) Automated name-based View Maps
Gate1DE02 Marker 88.7 Cotton - Graimondii_physical - Gr_Chr04 Gate1DE02 Marker Cotton 45,324,988 - 45,325,658 (bp) Automated name-based View Maps
Cotton - HDC - 24 Gate1DE02 Marker 76.2 (cM) Automated name-based View Maps
Gate2AA02 Marker 15.9 Cotton - HDC - 24 Gate2AA02 Marker 28.3 (cM) Automated name-based View Maps
Cotton - HDC - 23 Gate2AA02 Marker 170.9 (cM) Automated name-based View Maps
Cotton - PK - c23 Gate2AA02 Marker 172.6 (cM) Automated name-based View Maps
Gate2BC08 Marker 156.7 Cotton - PK - A02 Gate2BC08 Marker 156.1 (cM) Automated name-based View Maps
Cotton - HDC - 8 Gate2BC08 Marker 136.9 (cM) Automated name-based View Maps
Cotton - HDC - 24 Gate2BC08 Marker 145.7 (cM) Automated name-based View Maps
Gate2CC12 Marker 109.6 Cotton - HDC - 24 Gate2CC12 Marker 98.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr04 Gate2CC12 Marker Cotton 32,290,519 - 32,291,255 (bp) Automated name-based View Maps
Gate2CF02 Marker 120.2 Cotton - Graimondii_physical - Gr_Chr13 Gate2CF02 Marker Cotton 381,941 - 382,639 (bp) Automated name-based View Maps
Cotton - HDC - 24 Gate2CF02 Marker 110.9 (cM) Automated name-based View Maps
Gate3BF10 Marker 15.9 Cotton - HDC - 24 Gate3BF10 Marker 28.3 (cM) Automated name-based View Maps
Cotton - HDC - 9 Gate3BF10 Marker 129.4 (cM) Automated name-based View Maps
Cotton - PK - c9 Gate3BF10 Marker 148.5 (cM) Automated name-based View Maps
Cotton - PK - c23 Gate3BF10 Marker 169.1 (cM) Automated name-based View Maps
Cotton - HDC - 23 Gate3BF10 Marker 167.4 (cM) Automated name-based View Maps
Gate3CA01 Marker 170.7 Cotton - HDC - 24 Gate3CA01 Marker 148.5 (cM) Automated name-based View Maps
Cotton - HDC - 8 Gate3CA01 Marker 140.9 (cM) Automated name-based View Maps
Cotton - PK - A02 Gate3CA01 Marker 160.6 (cM) Automated name-based View Maps
Cotton - HDC - 24 Gate3CA01 Marker 151.4 (cM) Automated name-based View Maps
Gate3DD06 Marker 107 Cotton - HDC - 24 Gate3DD06 Marker 95.6 (cM) Automated name-based View Maps
Gate4AC08 Marker 117.6 Cotton - Graimondii_physical - Gr_Chr04 Gate4AC08 Marker Cotton 10,239,128 - 10,239,912 (bp) Automated name-based View Maps
Cotton - HDC - 24 Gate4AC08 Marker 107.9 (cM) Automated name-based View Maps
Gate4AD12 Marker 77.4 Cotton - HDC - 24 Gate4AD12 Marker 72.7 (cM) Automated name-based View Maps
Cotton - HDC - 24 Gate4AD12 Marker 63.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr04 Gate4AD12 Marker Cotton 54,324,849 - 54,325,668 (bp) Automated name-based View Maps
Gate4BG06 Marker 74.4 Cotton - PK - c12 Gate4BG06 Marker 40.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr04 Gate4BG06 Marker Cotton 51,585,787 - 51,586,588 (bp) Automated name-based View Maps
Cotton - HDC - 24 Gate4BG06 Marker 71.8 (cM) Automated name-based View Maps
Cotton - HDC - 12 Gate4BG06 Marker 88.2 (cM) Automated name-based View Maps
Gate4CB07 Marker 176.1 Cotton - Graimondii_physical - Gr_Chr04 Gate4CB07 Marker Cotton 603,055 - 603,604 (bp) Automated name-based View Maps
Cotton - HDC - 24 Gate4CB07 Marker 153.6 (cM) Automated name-based View Maps
Gate4DE09 Marker 104.3 Cotton - Graimondii_physical - Gr_Chr11 Gate4DE09 Marker Cotton 21,763,094 - 21,763,579 (bp) Automated name-based View Maps
Cotton - HDC - 9 Gate4DE09 Marker 23.6 (cM) Automated name-based View Maps
Cotton - PK - c9 Gate4DE09 Marker 31.6 (cM) Automated name-based View Maps
Cotton - HDC - 24 Gate4DE09 Marker 92.4 (cM) Automated name-based View Maps
P05_04 Marker 44.5 Cotton - Graimondii_physical - Gr_Chr12 P05_04 Marker Cotton 4,077,449 - 4,078,512 (bp) Automated name-based View Maps
Cotton - HDC - 24 P05_04 Marker 50.5 (cM) Automated name-based View Maps
P05_37 Marker 44.5 Cotton - Graimondii_physical - Gr_Chr07 P05_37 Marker Cotton 10,354,030 - 10,354,674 (bp) Automated name-based View Maps
Cotton - HDC - 24 P05_37 Marker 50.5 (cM) Automated name-based View Maps
P10_56 Marker 116.4 Cotton - PK - D02 P10_56 Marker 141.8 (cM) Automated name-based View Maps
Cotton - HDC - 21 P10_56 Marker 82 (cM) Automated name-based View Maps
Cotton - HDC - 24 P10_56 Marker 106.5 (cM) Automated name-based View Maps