CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps c15
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c15
Map Start: 0 cM
Map Stop: 176.4 cM
Features by Type:
96 Marker
13 QTL
109 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 109.       of 5 | Next
Cotton - PK - c15
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Unig26F09 Marker 60.8 Cotton - Graimondii_physical - Gr_Chr02 Unig26F09 Marker Cotton 52,624,583 - 52,625,232 (bp) Automated name-based View Maps
Cotton - HDC - 15 Unig26F09 Marker 170.2 (cM) Automated name-based View Maps
Cotton - HDC - 15 Unig26F09 Marker 72.5 (cM) Automated name-based View Maps
Unig26G08 Marker 46.7 Cotton - HDC - 15 Unig26G08 Marker 61.1 (cM) Automated name-based View Maps
Cotton - HDC - 16 Unig26G08 Marker 101.2 (cM) Automated name-based View Maps
Cotton - PK - c16 Unig26G08 Marker 116.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 Unig26G08 Marker Cotton 56,787,775 - 56,788,433 (bp) Automated name-based View Maps
Unig28E05 Marker 88.6 Cotton - HDC - 15 Unig28E05 Marker 90.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 Unig28E05 Marker Cotton 17,094,047 - 17,094,712 (bp) Automated name-based View Maps
A1126 Marker 7.2 Cotton - PK - c1 A1126 Marker 2.7 (cM) Automated name-based View Maps
Cotton - HDC - 1 A1126 Marker 22.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 A1126 Marker Cotton 11,847,155 - 11,848,827 (bp) Automated name-based View Maps
Cotton - HDC - 15 A1126 Marker 9.4 (cM) Automated name-based View Maps
A1340 Marker 90.4 Cotton - HDC - 15 A1340 Marker 95.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 A1340 Marker Cotton 10,901,839 - 10,902,458 (bp) Automated name-based View Maps
A1588 Marker 67.7 Cotton - HDC - 15 A1588 Marker 78.1 (cM) Automated name-based View Maps
A1686 Marker 78.5 Cotton - HDC - 1 A1686 Marker 70.7 (cM) Automated name-based View Maps
Cotton - GVc - 1 A1686 Marker 67.9 (cM) Automated name-based View Maps
Cotton - HDC - 15 A1686 Marker 84.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 A1686 Marker 155.5 (cM) Automated name-based View Maps
Cotton - PK - c1 A1686 Marker 97.3 (cM) Automated name-based View Maps
A1738 Marker 67.7 Cotton - Graimondii_physical - Gr_Chr02 A1738 Marker Cotton 43,126,462 - 43,126,718 (bp) Automated name-based View Maps
Cotton - HDC - 15 A1738 Marker 78.1 (cM) Automated name-based View Maps
BNL3345 Marker 102.8 Cotton - HDC - 15 BNL3345 Marker 118.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 BNL3345 Marker Cotton 3,880,412 - 3,880,703 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL3345 Marker 152.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c15 BNL3345 Marker 65.27 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL3345 Marker 109.3 (cM) Automated name-based View Maps
Coau1M01 Marker 134.5 Cotton - HDC - 15 Coau1M01 Marker 176 (cM) Automated name-based View Maps
Coau2E03 Marker 176.4 Cotton - HDC - 15 Coau2E03 Marker 230.8 (cM) Automated name-based View Maps
Coau2L06 Marker 75.8 Cotton - HDC - 15 Coau2L06 Marker 82.8 (cM) Automated name-based View Maps
G1051 Marker 37.5 Cotton - HDC - 15 G1051 Marker 49.1 (cM) Automated name-based View Maps
Cotton - PK - c1 G1051 Marker 39.3 (cM) Automated name-based View Maps
Cotton - HDC - 1 G1051 Marker 41.3 (cM) Automated name-based View Maps
Cotton - HDC - 15 G1051 Marker 49.6 (cM) Automated name-based View Maps
Gafb14K15 Marker 10.6 Cotton - HDC - 15 Gafb14K15 Marker 13.9 (cM) Automated name-based View Maps
Cotton - PK - c4 Gafb14K15 Marker 93.9 (cM) Automated name-based View Maps
Cotton - HDC - 4 Gafb14K15 Marker 63.2 (cM) Automated name-based View Maps
Gate1AH09 Marker 94.9 Cotton - HDC - 15 Gate1AH09 Marker 117.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 Gate1AH09 Marker Cotton 53,769,875 - 53,770,345 (bp) Automated name-based View Maps
Gate1BB12 Marker 73.1 Cotton - Graimondii_physical - Gr_Chr02 Gate1BB12 Marker Cotton 27,719,738 - 27,720,235 (bp) Automated name-based View Maps
Cotton - HDC - 15 Gate1BB12 Marker 81.3 (cM) Automated name-based View Maps
Gate1CD07 Marker 64.2 Cotton - HDC - 15 Gate1CD07 Marker 75.3 (cM) Automated name-based View Maps
Cotton - HDC - 14 Gate1CD07 Marker 68.7 (cM) Automated name-based View Maps
Cotton - PK - c14 Gate1CD07 Marker 82.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 Gate1CD07 Marker Cotton 34,545,441 - 34,546,033 (bp) Automated name-based View Maps
Gate2BG02 Marker 130.1 Cotton - HDC - 15 Gate2BG02 Marker 170.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 Gate2BG02 Marker Cotton 58,817,951 - 58,818,448 (bp) Automated name-based View Maps
Gate3BD01 Marker 25.6 Cotton - Graimondii_physical - Gr_Chr11 Gate3BD01 Marker Cotton 56,374,486 - 56,375,191 (bp) Automated name-based View Maps
Cotton - HDC - 20 Gate3BD01 Marker 44.3 (cM) Automated name-based View Maps
Cotton - HDC - 15 Gate3BD01 Marker 33.5 (cM) Automated name-based View Maps
Cotton - PK - c20 Gate3BD01 Marker 118.1 (cM) Automated name-based View Maps
Gate4AH09 Marker 29.4 Cotton - HDC - 15 Gate4AH09 Marker 38.5 (cM) Automated name-based View Maps
Cotton - HDC - 1 Gate4AH09 Marker 39.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 Gate4AH09 Marker Cotton 60,654,343 - 60,655,180 (bp) Automated name-based View Maps
Cotton - PK - c1 Gate4AH09 Marker 35.7 (cM) Automated name-based View Maps
Gate4BD03 Marker 112.6 Cotton - HDC - 15 Gate4BD03 Marker 147.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 Gate4BD03 Marker Cotton 2,080,261 - 2,081,061 (bp) Automated name-based View Maps
Gate4CD05 Marker 39.4 Cotton - Graimondii_physical - Gr_Chr09 Gate4CD05 Marker Cotton 53,881,824 - 53,882,535 (bp) Automated name-based View Maps
Cotton - HDC - 15 Gate4CD05 Marker 51.5 (cM) Automated name-based View Maps
Gate4DB12 Marker 9.8 Cotton - HDC - 15 Gate4DB12 Marker 12.8 (cM) Automated name-based View Maps
Cotton - PK - A01 Gate4DB12 Marker 16.5 (cM) Automated name-based View Maps
Cotton - PK - c1 Gate4DB12 Marker 2.7 (cM) Automated name-based View Maps
Cotton - HDC - 13 Gate4DB12 Marker 113 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 Gate4DB12 Marker Cotton 62,310,347 - 62,311,115 (bp) Automated name-based View Maps
Cotton - HDC - 1 Gate4DB12 Marker 22.9 (cM) Automated name-based View Maps
P01_03 Marker 77.6 Cotton - Graimondii_physical - Gr_Chr13 P01_03 Marker Cotton 523,896 - 524,490 (bp) Automated name-based View Maps
Cotton - HDC - 15 P01_03 Marker 83.9 (cM) Automated name-based View Maps
P05_31 Marker 94 Cotton - HDC - 15 P05_31 Marker 113.1 (cM) Automated name-based View Maps