CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps c16
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c16
Map Start: 0 cM
Map Stop: 149.9 cM
Features by Type:
88 Marker
8 QTL
96 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 96.       of 4 | Next
Cotton - PK - c16
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
A1311 Marker 58.1 Cotton - Graimondii_physical - Gr_Chr01 A1311 Marker Cotton 25,219,098 - 25,220,158 (bp) Automated name-based View Maps
Cotton - HDC - 16 A1311 Marker 52.4 (cM) Automated name-based View Maps
A1619 Marker 4.8 Cotton - PK - c22 A1619 Marker 44.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 A1619 Marker Cotton 54,527,798 - 54,529,052 (bp) Automated name-based View Maps
Cotton - HDC - 22 A1619 Marker 48.3 (cM) Automated name-based View Maps
Cotton - HDC - 16 A1619 Marker 7.3 (cM) Automated name-based View Maps
BNL1551 Marker 52.8 Cotton - GVc - 21 BNL1551 Marker 64.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 BNL1551 Marker Cotton 49,018,320 - 49,018,531 (bp) Automated name-based View Maps
Cotton - CH - 21 BNL1551 Marker 117.2 (cM) Automated name-based View Maps
Cotton - HDC - 21 BNL1551 Marker 138.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c21 BNL1551a Marker 48.73 (cM) Automated name-based View Maps
Cotton - T3 - 21 BNL1551 Marker 110.54 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D02 BNL1551 Marker 92.6 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL1551 Marker 47.9 (cM) Automated name-based View Maps
Cotton - TH - 21 BNL1551 Marker 63.5 (cM) Automated name-based View Maps
BNL3008 Marker 81.5 Cotton - TH - 16 BNL3008 Marker 63.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c16 BNL3008 Marker 127.5 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL3008 Marker 79.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 BNL3008 Marker Cotton 12,327,665 - 12,327,992 (bp) Automated name-based View Maps
Cotton - GVc - 16 BNL3008 Marker 78.6 (cM) Automated name-based View Maps
Cotton - E3 - 16 BNL3008 Marker 74.4 (cM) Automated name-based View Maps
Cotton - T3 - 16 BNL3008 Marker 49.75 (cM) Automated name-based View Maps
Cotton - CH - 16 BNL3008 Marker 69 (cM) Automated name-based View Maps
CMS14 Marker 52.8 Cotton - Graimondii_physical - Gr_Chr04 CMS14 Marker Cotton 5,875,118 - 5,875,687 (bp) Automated name-based View Maps
Cotton - HDC - 16 CMS14 Marker 47.9 (cM) Automated name-based View Maps
Coau1K20 Marker 123.5 Cotton - HDC - 16 Coau1K20 Marker 106.7 (cM) Automated name-based View Maps
Coau3C04 Marker 86.9 Cotton - HDC - 16 Coau3C04 Marker 79.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 Coau3C04 Marker Cotton 10,753,238 - 10,753,995 (bp) Automated name-based View Maps
Coau4B05 Marker 53.7 Cotton - HDC - 16 Coau4B05 Marker 48.7 (cM) Automated name-based View Maps
ESTS183 Marker 48.9 Cotton - HDC - 16 ESTS183 Marker 44.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 ESTS183 Marker Cotton 61,775,304 - 61,776,163 (bp) Automated name-based View Maps
G1261 Marker 75.3 Cotton - PK - c26 G1261 Marker 49.6 (cM) Automated name-based View Maps
Cotton - PK - D02 G1261 Marker 141.8 (cM) Automated name-based View Maps
Cotton - HDC - 26 G1261 Marker 108.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 G1261 Marker Cotton 52,965,148 - 52,966,293 (bp) Automated name-based View Maps
Cotton - PK - c20 G1261 Marker 89.2 (cM) Automated name-based View Maps
Cotton - HDC - 16 G1261 Marker 69 (cM) Automated name-based View Maps
Cotton - HDC - 21 G1261 Marker 82 (cM) Automated name-based View Maps
Cotton - HDC - 20 G1261 Marker 76.2 (cM) Automated name-based View Maps
Gafb22L22 Marker 113.6 Cotton - Graimondii_physical - Gr_Chr01 Gafb22L22 Marker Cotton 4,457,925 - 4,458,257 (bp) Automated name-based View Maps
Cotton - HDC - 16 Gafb22L22 Marker 99.3 (cM) Automated name-based View Maps
Gate1AG04 Marker 86.9 Cotton - Graimondii_physical - Gr_Chr01 Gate1AG04 Marker Cotton 10,678,732 - 10,679,198 (bp) Automated name-based View Maps
Cotton - HDC - 16 Gate1AG04 Marker 79.2 (cM) Automated name-based View Maps
Gate1CB11 Marker 11.3 Cotton - HDC - 16 Gate1CB11 Marker 12.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 Gate1CB11 Marker Cotton 53,050,734 - 53,051,569 (bp) Automated name-based View Maps
Cotton - HDC - 7 Gate1CB11 Marker 15.4 (cM) Automated name-based View Maps
Cotton - PK - c7 Gate1CB11 Marker 23.1 (cM) Automated name-based View Maps
Gate2DD02 Marker 71.1 Cotton - PK - c7 Gate2DD02 Marker 143.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 Gate2DD02 Marker Cotton 61,161,131 - 61,161,828 (bp) Automated name-based View Maps
Cotton - HDC - 16 Gate2DD02 Marker 65 (cM) Automated name-based View Maps
Cotton - HDC - 7 Gate2DD02 Marker 86.6 (cM) Automated name-based View Maps
Gate4AE08 Marker 79.8 Cotton - HDC - 4 Gate4AE08 Marker 62.5 (cM) Automated name-based View Maps
Cotton - HDC - 16 Gate4AE08 Marker 73.3 (cM) Automated name-based View Maps
Cotton - PK - c4 Gate4AE08 Marker 96.5 (cM) Automated name-based View Maps
Gate4BG08 Marker 68.6 Cotton - PK - c7 Gate4BG08 Marker 137.4 (cM) Automated name-based View Maps
Cotton - HDC - 16 Gate4BG08 Marker 62.5 (cM) Automated name-based View Maps
Cotton - HDC - 7 Gate4BG08 Marker 80.2 (cM) Automated name-based View Maps
Gate4CF04 Marker 147.2 Cotton - HDC - 16 Gate4CF04 Marker 128.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 Gate4CF04 Marker Cotton 1,218,755 - 1,219,472 (bp) Automated name-based View Maps
Cotton - HDC - 16 Gate4CF04 Marker 126.4 (cM) Automated name-based View Maps
M16_106 Marker 42.9 Cotton - HDC - 16 M16_106 Marker 39.5 (cM) Automated name-based View Maps
P02_64 Marker 68.6 Cotton - HDC - 16 P02_64 Marker 62.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 P02_64 Marker Cotton 1,589,905 - 1,590,312 (bp) Automated name-based View Maps
P12_16 Marker 7.6 Cotton - HDC - 16 P12_16 Marker 9.6 (cM) Automated name-based View Maps
pAR040 Marker 52.8 Cotton - HDC - 16 pAR040 Marker 47.9 (cM) Automated name-based View Maps
Cotton - PK - c7 pAR040 Marker 119.9 (cM) Automated name-based View Maps
Cotton - HDC - 7 pAR040 Marker 62.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 pAR040 Marker Cotton 39,568,938 - 39,569,327 (bp) Automated name-based View Maps
pAR139 Marker 111 Cotton - Graimondii_physical - Gr_Chr01 pAR139 Marker Cotton 5,392,750 - 5,393,550 (bp) Automated name-based View Maps
Cotton - HDC - 16 pAR139 Marker 97.3 (cM) Automated name-based View Maps
pAR173 Marker 42.8 Cotton - HDC - 7 pAR173 Marker 62.4 (cM) Automated name-based View Maps
Cotton - PK - c7 pAR173 Marker 119.9 (cM) Automated name-based View Maps
Cotton - HDC - 16 pAR173 Marker 47.9 (cM) Automated name-based View Maps
Cotton - HDC - 16 pAR173 Marker 39.4 (cM) Automated name-based View Maps
pAR197 Marker 78.9 Cotton - HDC - 4 pAR197 Marker 61.6 (cM) Automated name-based View Maps
Cotton - HDC - 16 pAR197 Marker 72.5 (cM) Automated name-based View Maps
Cotton - PK - c4 pAR197 Marker 100 (cM) Automated name-based View Maps
pAR285 Marker 52.8 Cotton - HDC - 16 pAR285 Marker 47.9 (cM) Automated name-based View Maps