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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-PK
(Reference Set)
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Correspondences
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Maps c25
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
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Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c25
Map Start: 0 cM
Map Stop: 159.9 cM
Features by Type:
86 Marker
11 QTL
97 Total

Map Features

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Items 1 to 25 of 97.       of 4 | Next
Cotton - PK - c25
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
P01_34 Marker 135.7 Cotton - Graimondii_physical - Gr_Chr13 P01_34 Marker Cotton 53,554,422 - 53,555,253 (bp) Automated name-based View Maps
Cotton - HDC - 25 P01_34 Marker 25 (cM) Automated name-based View Maps
Cotton - HDC - 6 P01_34 Marker 28.8 (cM) Automated name-based View Maps
Cotton - PK - c6 P01_34 Marker 97.9 (cM) Automated name-based View Maps
P09_03 Marker 96.5 Cotton - PK - c26 P09_03 Marker 121.5 (cM) Automated name-based View Maps
Cotton - HDC - 26 P09_03 Marker 55.3 (cM) Automated name-based View Maps
Cotton - HDC - 25 P09_03 Marker 77.9 (cM) Automated name-based View Maps
PAR01B03 Marker 60.6 Cotton - HDC - 25 pAR01B03 Marker 109.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 pAR01B03 Marker Cotton 5,550,247 - 5,551,071 (bp) Automated name-based View Maps
PAR06E02 Marker 94.7 Cotton - HDC - 25 pAR06E02 Marker 78.2 (cM) Automated name-based View Maps
PAR07B11 Marker 94.7 Cotton - HDC - 25 pAR07B11 Marker 78.2 (cM) Automated name-based View Maps
pAR145 Marker 112.7 Cotton - HDC - 25 pAR145 Marker 49.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 pAR145 Marker Cotton 242,867 - 243,099 (bp) Automated name-based View Maps
pAR364 Marker 112.7 Cotton - GVc - 25 pAR364 Marker 106.4 (cM) Automated name-based View Maps
Cotton - HDC - 25 pAR364 Marker 49.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 pAR364 Marker Cotton 55,899,384 - 55,900,467 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c25 pAR364 Marker 132.2 (cM) Automated name-based View Maps
pAR396 Marker 88.1 Cotton - HDC - 25 pAR396 Marker 79.5 (cM) Automated name-based View Maps
Cotton - PK - c17 pAR396 Marker 66 (cM) Automated name-based View Maps
Cotton - HDC - 17 pAR396 Marker 62.3 (cM) Automated name-based View Maps
pAR4_44 Marker 120.8 Cotton - HDC - 25 pAR04_44 Marker 36.3 (cM) Automated name-based View Maps
pAR433 Marker 47.2 Cotton - PK - c6 pAR433 Marker 23.6 (cM) Automated name-based View Maps
Cotton - HDC - 25 pAR433 Marker 121.1 (cM) Automated name-based View Maps
Cotton - HDC - 6 pAR433 Marker 111 (cM) Automated name-based View Maps
pAR550 Marker 119.8 Cotton - HDC - 25 pAR550 Marker 37.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 pAR550 Marker Cotton 57,918,491 - 57,919,245 (bp) Automated name-based View Maps
pAR783 Marker 100.6 Cotton - HDC - 25 pAR783 Marker 77.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c25 pAR783 Marker 106 (cM) Automated name-based View Maps
Cotton - GVc - 25 pAR783 Marker 76.4 (cM) Automated name-based View Maps
Cotton - HDC - 6 pAR783 Marker 88.1 (cM) Automated name-based View Maps
Cotton - PK - c6 pAR783 Marker 58 (cM) Automated name-based View Maps
pAR897 Marker 96.5 Cotton - Guazuncho2xVH8-BC1 - c7 pAR897 Marker 70.2 (cM) Automated name-based View Maps
Cotton - HDC - 5 pAR897 Marker 84.5 (cM) Automated name-based View Maps
Cotton - PK - c5 pAR897 Marker 76.9 (cM) Automated name-based View Maps
Cotton - HDC - 7 pAR897 Marker 60.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 pAR897 Marker Cotton 38,911,252 - 38,912,081 (bp) Automated name-based View Maps
Cotton - GVc - 7 pAR897 Marker 30.1 (cM) Automated name-based View Maps
Cotton - HDC - 25 pAR897 Marker 77.9 (cM) Automated name-based View Maps
pAR981 Marker 112 Cotton - HDC - 25 pAR981 Marker 49.1 (cM) Automated name-based View Maps
Cotton - HDC - 25 pAR981 Marker 50.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 pAR981 Marker Cotton 50,389,359 - 50,389,557 (bp) Automated name-based View Maps
pBAM325 Marker 121.8 Cotton - Graimondii_physical - Gr_Chr10 pBAM325 Marker Cotton 58,559,052 - 58,560,066 (bp) Automated name-based View Maps
Cotton - HDC - 25 pBAM325 Marker 35.5 (cM) Automated name-based View Maps
pGH653 Marker 125.9 Cotton - HDC - 10 pGH653 Marker 121.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 pGH653 Marker Cotton 7,954,372 - 7,954,865 (bp) Automated name-based View Maps
Cotton - HDC - 25 pGH653 Marker 32.4 (cM) Automated name-based View Maps
Cotton - PK - c10 pGH653 Marker 58.4 (cM) Automated name-based View Maps
PVNC070 Marker 127.9 Cotton - HDC - 25 pVNC070 Marker 30.9 (cM) Automated name-based View Maps
PXP1_47 Marker 77.5 Cotton - HDC - 25 pXP1_47 Marker 89.6 (cM) Automated name-based View Maps
PXP3_56 Marker 47.1 Cotton - HDC - 25 pXP3_56 Marker 121.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 PXP3_56 Marker Cotton 4,791,263 - 4,791,581 (bp) Automated name-based View Maps
Unig06D09 Marker 0 Cotton - HDC - 25 Unig06D09 Marker 154.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 Unig06D09 Marker Cotton 81,037 - 81,692 (bp) Automated name-based View Maps
Unig22A07 Marker 156.1 Cotton - HDC - 25 Unig22A07 Marker 9.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 Unig22A07 Marker Cotton 61,558,421 - 61,559,011 (bp) Automated name-based View Maps
Unig24C12 Marker 129.8 Cotton - Graimondii_physical - Gr_Chr10 Unig24C12 Marker Cotton 59,570,420 - 59,571,052 (bp) Automated name-based View Maps
Cotton - HDC - 25 Unig24C12 Marker 29.5 (cM) Automated name-based View Maps
Cotton - HDC - 25 Unig24C12 Marker 27.2 (cM) Automated name-based View Maps
Unig24E08 Marker 111.2 Cotton - HDC - 25 Unig24E08 Marker 52.6 (cM) Automated name-based View Maps
Unig25C07 Marker 32.5 Cotton - HDC - 25 Unig25C07 Marker 130.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 Unig25C07 Marker Cotton 2,754,068 - 2,754,734 (bp) Automated name-based View Maps
Unig26G04 Marker 67.6 Cotton - HDC - 25 Unig26G04 Marker 96 (cM) Automated name-based View Maps
Cotton - HDC - 25 Unig26G04 Marker 101.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr10 Unig26G04 Marker Cotton 11,662,456 - 11,663,129 (bp) Automated name-based View Maps