CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps c26
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c26
Map Start: 0 cM
Map Stop: 164.1 cM
Features by Type:
91 Marker
15 QTL
106 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 106.       of 5 | Next
Cotton - PK - c26
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PAR04A05 Marker 72.4 Cotton - HDC - 26 pAR04A05 Marker 92.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 pAR04A05 Marker Cotton 43,167,059 - 43,167,759 (bp) Automated name-based View Maps
pAR054 Marker 67.9 Cotton - HDC - 26 pAR054 Marker 94.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 pAR054 Marker Cotton 46,592,389 - 46,592,753 (bp) Automated name-based View Maps
PAR07B02 Marker 72.4 Cotton - HDC - 26 pAR07B02 Marker 92.6 (cM) Automated name-based View Maps
PAR1_11 Marker 83 Cotton - HDC - 26 pAR01_11 Marker 83.4 (cM) Automated name-based View Maps
pAR101 Marker 4.9 Cotton - HDC - 21 pAR101 Marker 147.7 (cM) Automated name-based View Maps
Cotton - PK - c12 pAR101 Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 26 pAR101 Marker 143.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 pAR101 Marker Cotton 56,299,761 - 56,300,341 (bp) Automated name-based View Maps
Cotton - PK - D02 pAR101 Marker 5.2 (cM) Automated name-based View Maps
Cotton - HDC - 12 pAR101 Marker 114.2 (cM) Automated name-based View Maps
pAR10F12 Marker 72.4 Cotton - HDC - 7 pAR10F12 Marker 11.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 pAR10F12 Marker Cotton 53,507,377 - 53,507,797 (bp) Automated name-based View Maps
Cotton - HDC - 26 pAR10F12 Marker 92.6 (cM) Automated name-based View Maps
Cotton - PK - c7 pAR10F12 Marker 17.7 (cM) Automated name-based View Maps
pAR177 Marker 157.4 Cotton - HDC - 26 pAR177 Marker 15.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 pAR177 Marker Cotton 1,216,647 - 1,217,123 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c26 pAR177 Marker 179 (cM) Automated name-based View Maps
Cotton - PK - c12 pAR177 Marker 213.6 (cM) Automated name-based View Maps
Cotton - GVc - 26 pAR177 Marker 128.3 (cM) Automated name-based View Maps
Cotton - HDC - 12 pAR177 Marker 13.6 (cM) Automated name-based View Maps
pAR243 Marker 44.9 Cotton - HDC - 26 pAR243 Marker 112 (cM) Automated name-based View Maps
pAR563 Marker 79 Cotton - PK - c12 pAR563 Marker 59 (cM) Automated name-based View Maps
Cotton - GVc - 12 pAR563 Marker 73.1 (cM) Automated name-based View Maps
Cotton - HDC - 12 pAR563 Marker 61.1 (cM) Automated name-based View Maps
Cotton - HDC - 26 pAR563 Marker 88.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c12 pAR563 Marker 83.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 pAR563 Marker Cotton 41,675,784 - 41,676,150 (bp) Automated name-based View Maps
pAR764 Marker 148.9 Cotton - HDC - 3 pAR764 Marker 48.7 (cM) Automated name-based View Maps
Cotton - HDC - 26 pAR764 Marker 24.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 pAR764 Marker Cotton 61,188,744 - 61,189,318 (bp) Automated name-based View Maps
Cotton - PK - c3 pAR764 Marker 124.4 (cM) Automated name-based View Maps
pAR984 Marker 119 Cotton - HDC - 26 pAR984 Marker 58 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 pAR984 Marker Cotton 9,000,841 - 9,001,046 (bp) Automated name-based View Maps
pGH350 Marker 121.5 Cotton - HDC - 26 pGH350 Marker 55.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 pGH350 Marker Cotton 7,076,584 - 7,077,441 (bp) Automated name-based View Maps
pGH592 Marker 58.1 Cotton - Graimondii_physical - Gr_Chr08 pGH592 Marker Cotton 48,258,821 - 48,259,928 (bp) Automated name-based View Maps
Cotton - HDC - 26 pGH592 Marker 101.5 (cM) Automated name-based View Maps
pGH785 Marker 68.8 Cotton - Graimondii_physical - Gr_Chr08 pGH785 Marker Cotton 46,030,579 - 46,031,179 (bp) Automated name-based View Maps
Cotton - HDC - 26 pGH785 Marker 94.2 (cM) Automated name-based View Maps
PXP1_73 Marker 21.2 Cotton - HDC - 26 pXP1_73 Marker 130.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 PXP1_73 Marker Cotton 55,058,536 - 55,059,316 (bp) Automated name-based View Maps
PXP2_79 Marker 92.1 Cotton - HDC - 26 pXP2_79 Marker 71.9 (cM) Automated name-based View Maps
Unig06D12 Marker 43.2 Cotton - HDC - 26 Unig06D12 Marker 113.3 (cM) Automated name-based View Maps
Cotton - HDC - 26 Unig06D12 Marker 110.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr04 Unig06D12 Marker Cotton 53,747,259 - 53,747,915 (bp) Automated name-based View Maps
Unig22D07 Marker 16.3 Cotton - HDC - 26 Unig22D07 Marker 134.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 Unig22D07 Marker Cotton 55,759,317 - 55,759,947 (bp) Automated name-based View Maps
Unig25H12 Marker 10.9 Cotton - HDC - 26 Unig25H12 Marker 138.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 Unig25H12 Marker Cotton 15,994,444 - 15,995,098 (bp) Automated name-based View Maps
Unig28D04 Marker 45 Cotton - HDC - 26 Unig28D04 Marker 111.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 Unig28D04 Marker Cotton 51,572,558 - 51,573,213 (bp) Automated name-based View Maps
A1210 Marker 52.3 Cotton - GVc - 12 A1210 Marker 40.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c12 A1210 Marker 42.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 A1210 Marker Cotton 49,857,190 - 49,858,073 (bp) Automated name-based View Maps
Cotton - PK - c12 A1210 Marker 46.5 (cM) Automated name-based View Maps
Cotton - HDC - 12 A1210 Marker 83.9 (cM) Automated name-based View Maps
Cotton - HDC - 26 A1210 Marker 106.1 (cM) Automated name-based View Maps
A1310 Marker 35.1 Cotton - HDC - 4 A1310 Marker 53.3 (cM) Automated name-based View Maps
Cotton - HDC - 26 A1310 Marker 119.8 (cM) Automated name-based View Maps
Cotton - HDC - 12 A1310 Marker 96.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c12 A1310 Marker 29.4 (cM) Automated name-based View Maps
Cotton - GVc - 12 A1310 Marker 25.8 (cM) Automated name-based View Maps
Cotton - PK - c4 A1310 Marker 132.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 A1310 Marker Cotton 53,685,800 - 53,687,481 (bp) Automated name-based View Maps
A1524 Marker 106.2 Cotton - HDC - 26 A1524 Marker 62.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 A1524 Marker Cotton 23,520,904 - 23,521,474 (bp) Automated name-based View Maps
A1685 Marker 145.9 Cotton - PK - c12 A1685 Marker 197.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 A1685 Marker Cotton 2,846,531 - 2,847,374 (bp) Automated name-based View Maps
Cotton - HDC - 12 A1685 Marker 21.1 (cM) Automated name-based View Maps
Cotton - HDC - 26 A1685 Marker 28.1 (cM) Automated name-based View Maps
A1776 Marker 72.4 Cotton - HDC - 26 A1776 Marker 92.6 (cM) Automated name-based View Maps