CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps c2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c2
Map Start: 0 cM
Map Stop: 147.4 cM
Features by Type:
66 Marker
15 QTL
81 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 81.       of 4 | Next
Cotton - PK - c2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
pAR318 Marker 93.3 Cotton - HDC - 2 pAR318 Marker 59.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 pAR318 Marker Cotton 57,181,675 - 57,182,390 (bp) Automated name-based View Maps
pAR451 Marker 52.4 Cotton - Guazuncho2xVH8-BC1 - c14 pAR451 Marker 17.6 (cM) Automated name-based View Maps
Cotton - HDC - 14 pAR451 Marker 106.3 (cM) Automated name-based View Maps
Cotton - HDC - 2 pAR451 Marker 87.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 pAR451 Marker Cotton 4,186,475 - 4,187,278 (bp) Automated name-based View Maps
Cotton - PK - c14 pAR451 Marker 35.5 (cM) Automated name-based View Maps
Cotton - HDC - 21 pAR451 Marker 119.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D02 pAR451 Marker 108 (cM) Automated name-based View Maps
Cotton - GVc - 21 pAR451 Marker 83.5 (cM) Automated name-based View Maps
Cotton - GVc - 14 pAR451 Marker 18.5 (cM) Automated name-based View Maps
pAR701 Marker 92.4 Cotton - HDC - 2 pAR701 Marker 60.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 pAR701 Marker Cotton 5,004,836 - 5,005,344 (bp) Automated name-based View Maps
pAR851 Marker 132.6 Cotton - Graimondii_physical - Gr_Chr03 pAR851 Marker Cotton 733,833 - 734,348 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 pAR851 Marker 164.7 (cM) Automated name-based View Maps
Cotton - HDC - 2 pAR851 Marker 15.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c2 pAR851 Marker 70.59 (cM) Automated name-based View Maps
Cotton - GVc - 2 pAR851 Marker 92.1 (cM) Automated name-based View Maps
pGH399 Marker 91.5 Cotton - HDC - 17 pGH399 Marker 73.4 (cM) Automated name-based View Maps
Cotton - PK - c17 pGH399 Marker 55.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 pGH399 Marker Cotton 24,163,072 - 24,163,809 (bp) Automated name-based View Maps
Cotton - HDC - 2 pGH399 Marker 61.3 (cM) Automated name-based View Maps
pGH549 Marker 87.7 Cotton - HDC - 17 pGH549 Marker 43.4 (cM) Automated name-based View Maps
Cotton - HDC - 15 pGH549 Marker 61.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 pGH549 Marker Cotton 6,639,584 - 6,640,068 (bp) Automated name-based View Maps
Cotton - PK - c15 pGH549 Marker 46.7 (cM) Automated name-based View Maps
Cotton - HDC - 2 pGH549 Marker 64.4 (cM) Automated name-based View Maps
Cotton - PK - c17 pGH549 Marker 84 (cM) Automated name-based View Maps
Unig06G11 Marker 78 Cotton - Graimondii_physical - Gr_Chr07 Unig06G11 Marker Cotton 49,394,778 - 49,395,422 (bp) Automated name-based View Maps
Cotton - HDC - 2 Unig06G11 Marker 64.4 (cM) Automated name-based View Maps
Unig24G02 Marker 93.8 Cotton - Graimondii_physical - Gr_Chr03 Unig24G02 Marker Cotton 9,179,443 - 9,180,102 (bp) Automated name-based View Maps
Cotton - HDC - 2 Unig24G02 Marker 58.7 (cM) Automated name-based View Maps
Cotton - HDC - 17 Unig24G02 Marker 73.4 (cM) Automated name-based View Maps
Cotton - PK - c17 Unig24G02 Marker 55.3 (cM) Automated name-based View Maps
Unig25C09 Marker 133.5 Cotton - HDC - 2 Unig25C09 Marker 14.9 (cM) Automated name-based View Maps
Unig27G05 Marker 108.2 Cotton - HDC - 2 Unig27G05 Marker 42.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 Unig27G05 Marker Cotton 3,185,870 - 3,186,395 (bp) Automated name-based View Maps
A1146 Marker 91.5 Cotton - HDC - 2 A1146 Marker 61.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 A1146 Marker Cotton 4,807,973 - 4,808,795 (bp) Automated name-based View Maps
A1436 Marker 111.9 Cotton - Graimondii_physical - Gr_Chr03 A1436 Marker Cotton 2,422,175 - 2,423,136 (bp) Automated name-based View Maps
Cotton - HDC - 2 A1436 Marker 38.7 (cM) Automated name-based View Maps
Cotton - PK - c17 A1436 Marker 74.1 (cM) Automated name-based View Maps
Cotton - HDC - 17 A1436 Marker 53.8 (cM) Automated name-based View Maps
BNL1667 Marker 85.9 Cotton - T3 - 15 BNL1667 Marker 41.51 (cM) Automated name-based View Maps
Cotton - HDC - 14 CLU14 Marker 75.5 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU14 Marker 55.2 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL1667 Marker 122.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c15 BNL1667 Marker 88.5 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU14 Marker 106.1 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL1667 Marker 109.6 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL1667 Marker 34.76 (cM) Automated name-based View Maps
Cotton - CH - 1 BNL1667 Marker 97.4 (cM) Automated name-based View Maps
Cotton - HDC - 17 CLU14 Marker 74.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL1667 Marker 137.6 (cM) Automated name-based View Maps
Cotton - TH - 15 BNL1667 Marker 48.8 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU14 Marker 94.9 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL1667 Marker 97.4 (cM) Automated name-based View Maps
Cotton - HDC - 2 CLU14 Marker 64.4 (cM) Automated name-based View Maps
Cotton - PK - c14 BNL1667 Marker 73.4 (cM) Automated name-based View Maps
BNL3971 Marker 88.7 Cotton - Guazuncho2xVH8-BC1 - c2 BNL3971 Marker 84.3 (cM) Automated name-based View Maps
Cotton - HDC - 2 BNL3971 Marker 64.4 (cM) Automated name-based View Maps
Cotton - T3 - 2 BNL3971 Marker 59.5 (cM) Automated name-based View Maps
Cotton - GVc - 2 BNL3971 Marker 45.5 (cM) Automated name-based View Maps
Cotton - TH - 2 BNL3971 Marker 48.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c2 BNL3971 Marker 36.49 (cM) Automated name-based View Maps
Cotton - CH - 2 BNL3971 Marker 53.1 (cM) Automated name-based View Maps
Cotton - E3 - 2 BNL3971 Marker 78.3 (cM) Automated name-based View Maps
Coau1O15 Marker 96.6 Cotton - HDC - 8 Coau1O15 Marker 73.8 (cM) Automated name-based View Maps
Cotton - PK - A02 Coau1O15 Marker 63.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 Coau1O15 Marker Cotton 43,232,547 - 43,233,094 (bp) Automated name-based View Maps
Cotton - HDC - 8 Coau1O15 Marker 87.8 (cM) Automated name-based View Maps
Cotton - PK - A02 Coau1O15 Marker 68.4 (cM) Automated name-based View Maps
Cotton - HDC - 2 Coau1O15 Marker 55.6 (cM) Automated name-based View Maps
Coau2I05 Marker 26 Cotton - Graimondii_physical - Gr_Chr12 Coau2I05 Marker Cotton 24,460,324 - 24,460,933 (bp) Automated name-based View Maps
Cotton - HDC - 4 Coau2I05 Marker 62.3 (cM) Automated name-based View Maps
Cotton - PK - c4 Coau2I05 Marker 97.3 (cM) Automated name-based View Maps
Cotton - HDC - 2 Coau2I05 Marker 110.8 (cM) Automated name-based View Maps
Coau4H19 Marker 100.3 Cotton - Graimondii_physical - Gr_Chr01 Coau4H19 Marker Cotton 8,002,384 - 8,003,065 (bp) Automated name-based View Maps
Cotton - HDC - 2 Coau4H19 Marker 51.5 (cM) Automated name-based View Maps
G1148 Marker 78 Cotton - HDC - 2 G1148 Marker 64.4 (cM) Automated name-based View Maps
Gafb15F06 Marker 80.9 Cotton - Graimondii_physical - Gr_Chr05 Gafb15F06 Marker Cotton 12,886,830 - 12,887,470 (bp) Automated name-based View Maps
Cotton - HDC - 2 Gafb15F06 Marker 64.4 (cM) Automated name-based View Maps
Gate1CB05 Marker 100.3 Cotton - HDC - 2 Gate1CB05 Marker 51.5 (cM) Automated name-based View Maps
Gate1DA03 Marker 63.2 Cotton - HDC - 2 Gate1DA03 Marker 69.5 (cM) Automated name-based View Maps
Gate3BA04 Marker 97.2 Cotton - HDC - 2 Gate3BA04 Marker 55 (cM) Automated name-based View Maps
Gate3CF08 Marker 92.4 Cotton - HDC - 2 Gate3CF08 Marker 60.3 (cM) Automated name-based View Maps
Gate4AD09 Marker 73.1 Cotton - Graimondii_physical - Gr_Chr05 Gate4AD09 Marker Cotton 10,517,449 - 10,517,852 (bp) Automated name-based View Maps
Cotton - HDC - 2 Gate4AD09 Marker 64.5 (cM) Automated name-based View Maps
Cotton - HDC - 14 Gate4AD09 Marker 77.3 (cM) Automated name-based View Maps
Cotton - PK - c14 Gate4AD09 Marker 68.4 (cM) Automated name-based View Maps
Gate4BD11 Marker 55.1 Cotton - PK - c14 Gate4BD11 Marker 38.1 (cM) Automated name-based View Maps
Cotton - HDC - 14 Gate4BD11 Marker 104.1 (cM) Automated name-based View Maps
Cotton - PK - c14 Gate4BD11 Marker 26.4 (cM) Automated name-based View Maps
Cotton - HDC - 2 Gate4BD11 Marker 84.5 (cM) Automated name-based View Maps
Cotton - HDC - 14 Gate4BD11 Marker 113.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 Gate4BD11 Marker Cotton 4,865,159 - 4,865,580 (bp) Automated name-based View Maps